Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  301 bits (770), Expect = 4e-86
 Identities = 166/396 (41%), Positives = 241/396 (60%), Gaps = 11/396 (2%)

Query: 69  AVHGFRQQHPSVDLIVLARADAIRQAVDAVRAGAGNYLTYPLHPEEVRLVTQKLHESALV 128
           A+   R  +P++ ++++     +  AVDA+R+GA +YLT PL  EE+RL  ++  + A +
Sbjct: 68  ALREIRAYNPAIPILIMTAYSNVESAVDAIRSGAYDYLTKPLDFEELRLTLERALDHAAL 127

Query: 129 RSELDYLRDRLIQGRSGGDEGIVLDTRSPRMREVYDKIRLVAATRSTVLLTGETGTGKSL 188
           R E   L+  L    S    GI+  ++S  M  + D +  +A + +TVL+TGE+GTGK L
Sbjct: 128 RDENAALKTTLAS--SFDPAGIIGQSQS--MHRLMDMMASIAPSEATVLVTGESGTGKEL 183

Query: 189 IARLIHSHSNRHGKRFISVHCGAIPEALVESELFGHEKGAFTGAIRKKPGRFEIAEGGTI 248
           IAR IH++S R    +++V+C A+ E L+ESELFGHEKGAFTGA +++ GRF+ A+ GTI
Sbjct: 184 IARAIHANSQRRHGPYVTVNCAALTETLLESELFGHEKGAFTGAEKRREGRFQSADKGTI 243

Query: 249 FLDEIGTIGPSVQIKLLNVLQDRCFQRVGGETVIRPDVRVVAATNEDLSTLCAQGRFRRD 308
           FLDEIG     +Q KLL  +Q+R  QRVG +  +R DVR++AATN DL      GRFR+D
Sbjct: 244 FLDEIGETSLPMQAKLLRAIQEREIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQD 303

Query: 309 LYYRLNVFPIDIPPLRERKEDILQLAEAFVRRCNPQRSRDIRAIHPDVIDAFMRYDWPGN 368
           LYYRLNV  + +PPLRER EDI  LA  F+RR   +  + ++   P  +D  +++DWPGN
Sbjct: 304 LYYRLNVVTLHVPPLRERVEDIPLLAGHFLRRFTEKNGKRVKGFTPQAMDRLLKHDWPGN 363

Query: 369 VRELENIIERACILEGGEVLSPEAFPAEFRGLPHAVRNRALDISLPLEAARRHALDSFER 428
           VRELEN  ERA +L  GE +S        R LPHA+     D +  +       L+  ER
Sbjct: 364 VRELENAAERAVVLLVGEYISE-------RELPHAIAGGDGDATCAVPRFNGMTLEEIER 416

Query: 429 EYLERALATSGGSIKGAAAIAGVTTRQIHKLMTRHS 464
             +  A+  S G+   AA   G+T + +H  + R++
Sbjct: 417 AAILDAMDASEGNKSEAARRLGITRKTLHAKLNRYA 452