Pairwise Alignments

Query, 479 a.a., sigma-54 dependent transcriptional regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 453 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  274 bits (701), Expect = 4e-78
 Identities = 164/435 (37%), Positives = 248/435 (57%), Gaps = 35/435 (8%)

Query: 43  RAHDIALVDMDILCGGTTTDYETIRQ---AVHGFRQQHPSVDLIVLARADAIRQAVDAVR 99
           R H  A+V +D+   G   D E   +   A+    +Q P V +IV+     +  A+ A++
Sbjct: 42  RGHSPAVVTLDL---GLPPDAEGTSEGFRALDALLKQDPRVQVIVVTGHHDVENALRAIQ 98

Query: 100 AGAGNYLTYPLHPEEVRLVTQKLHESALVRSELDYLRDRLIQG--RSGGDEGIVLDTRSP 157
            GA ++   P   + ++++  +          L  LRD +     R G  +GIV   + P
Sbjct: 99  GGAYDFCHKPADLDVLKIIIGRAFF-------LHGLRDNVGPPVKRQGECQGIV--GQCP 149

Query: 158 RMREVYDKIRLVAATRSTVLLTGETGTGKSLIARLIHSHSNRHGKRFISVHCGAIPEALV 217
            M  V++ I  VA++   VL+TGE+GTGK L+AR IH+ S+R    F++++CGAIP+ L+
Sbjct: 150 AMLAVFETISKVASSDVPVLVTGESGTGKELVARAIHAFSHRTSMPFVAINCGAIPDNLL 209

Query: 218 ESELFGHEKGAFTGAIRKKPGRFEIAEGGTIFLDEIGTIGPSVQIKLLNVLQDRCFQRVG 277
           E+E FG+EKGAFTGA ++  G+ E A+ GT+FLDEIG + P++Q+KLL  LQ+   QRVG
Sbjct: 210 EAEFFGYEKGAFTGATQRVQGKVEYADSGTLFLDEIGELPPNLQVKLLRFLQEMVIQRVG 269

Query: 278 GETVIRPDVRVVAATNEDLSTLCAQGRFRRDLYYRLNVFPIDIPPLRERKEDILQLAEAF 337
           G   IR D R+VAATN D+ +  A GRFR DLYYR+ V PI +PPLR R +DIL LA  F
Sbjct: 270 GRKDIRVDARIVAATNRDIQSEIASGRFREDLYYRIGVVPIVLPPLRTRGDDILLLARHF 329

Query: 338 VRRCNPQRSRDIRAIHPDVIDAFMRYDWPGNVRELENIIERACILEGGEVLSP------E 391
           + R   +R+  ++ + P    A +R++WPGNVRELEN + RA I   G+ ++P      +
Sbjct: 330 LERFARERNHQVKMLSPAATQAMLRHNWPGNVRELENKVRRAVIFASGQHIAPADLGFDD 389

Query: 392 AFPAEFRGLPHAVRNRALDISLPLEAARRHALDSFEREYLERALATSGGSIKGAAAIAGV 451
           A PA+    P A            E   + A ++ ER+ +  AL    G+I  A+   GV
Sbjct: 390 AMPADAPAPPRA------------EGTLKEARNALERDIVLTALEKCSGNIVQASQAIGV 437

Query: 452 TTRQIHKLMTRHSLK 466
           +    + L+ +H ++
Sbjct: 438 SRPTFYDLLRKHGIE 452