Pairwise Alignments

Query, 642 a.a., selenocysteine-specific translation elongation factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 673 a.a., selenocysteine-specific translation elongation factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  268 bits (686), Expect = 4e-76
 Identities = 214/637 (33%), Positives = 319/637 (50%), Gaps = 36/637 (5%)

Query: 3   VIMGTAGHIDHGKTSLVRALTGIDCDRLDEEKRRGITIELGFAFCDLPGGGRLGVVDVPG 62
           +IM TAGH+DHGK++L+RALTG++ DRL EEKRRG+TI+LG+AF  L  G RL  +DVPG
Sbjct: 1   MIMVTAGHVDHGKSTLIRALTGMNTDRLPEEKRRGMTIDLGYAFMPLRDGTRLAFIDVPG 60

Query: 63  HEKFVRNMVAGASGVDFVMLVIAADEGVMPQTREHLEICSLLGIRHGLVALTKVDMVDAD 122
           HEKF+ NM+ G S V   +LV+A D+GVMPQTREHL+I +LL +    + LTK D+VD  
Sbjct: 61  HEKFINNMLVGVSHVRHALLVLACDDGVMPQTREHLQILALLPLNSLTLVLTKRDLVDDQ 120

Query: 123 WLELAQDDVAGFLAGTFLEGAPIFPVSA--VTGQGLDTLREHLATL-ERELRPERRTDLF 179
                  +    LA   +E + +F V A      G++TL++H+  + E++         F
Sbjct: 121 TAAKLASEGITLLAEYGIEASGVFEVCASDAGDAGVETLKQHILDIAEQQSTQAEDASSF 180

Query: 180 RLPVDRVFTMRGHGTVVTGTMISGSLKVGDDVVLYPEGRTSK--VRGLQSHGGPVDKALA 237
           R+ +DR F+++G G VVTGT+ISGS+ VGD   LY  G+ +K  VRG+   G  V +AL+
Sbjct: 181 RMTLDRAFSVKGVGCVVTGTVISGSVCVGDS--LYSSGQKAKLRVRGIHCQGMEVHRALS 238

Query: 238 GRRTAVNLQGVDVAEV-QRGEVLALPGTLFPAQRWDVRLTCLSSAARPLRNRTEVHFHHG 296
           G R A+NL GVD      RG+ L    +  P      R      +  PL +   VH HHG
Sbjct: 239 GTRVALNLTGVDNHRAPARGDWL----SSLPQADLCARPVVHIRSFEPLTHWQNVHCHHG 294

Query: 297 AREVLARLHFHDRDRLNPGETALCQVRFTEPMVGVFGDRCVVRTFSPLRTVAGGVVVNPT 356
           A   L R+     D  +     L ++   +P++    D  V+R     +T+  G V+   
Sbjct: 295 ADHTLGRVSL--LDEADGQGRYLAEIVLDKPLLLCQDDPIVLRHIGGKQTLGAGRVLALK 352

Query: 357 GHDLRRRDPHFADKVALLASLPEATEEELVQAHVDLSGNAGAGFVRLS-VLTD--LESKR 413
             + ++R P   ++V+ L  L + T    V A +  S       +R    LTD  L +  
Sbjct: 353 VSNRKKRTP---ERVSKLQQLAQLTNPVNVLALLGQSEALSIDEIRWRWQLTDEGLAAML 409

Query: 414 LEKVLQALGARGRLFCFDREERAYVGADALQALSAGCLDHAGAFHAKEPLKPGMARGVLA 473
            +  L  +GA G            +    L+      +D    +H + P + G+ R  L 
Sbjct: 410 AQAGLTRIGAYG------------LSTQLLEQEKQQFIDLLREYHQEHPDQLGLGRNRLQ 457

Query: 474 SGWGRGLHPRLIHFVVERLIKQGALVAEGDVLRLPGHKVSLASDQEGLRGKLLAIYSEAG 533
                 L   L + V++ L ++G +   G +L+L  H++ L S+ +    + LA +    
Sbjct: 458 RMSHSVLPSELANKVLDSLCQEGQMALRGALLQLADHRIVLDSEAQQC-WQRLAPWLAQQ 516

Query: 534 MTPPNLKDVLETLSLE-QKEAAPVLKLLHDGGELVRVKDGLLFHRSALDELKGRVARWFD 592
            +P  + ++ E L LE  K      +L+  G     VKD  L     L      V    D
Sbjct: 517 TSPVWVTEMGEYLDLEPAKLRLLCFQLVQQGFITAVVKDRYLLSEQ-LCHYANLVREHVD 575

Query: 593 DHDDLDPSGFKELSGGLSRKYIIPLLEYFDRERVTIR 629
            H  L+ + FK++  GL RK  I LLE+FDR   T R
Sbjct: 576 THGKLETAEFKDMI-GLGRKVSIQLLEFFDRSGFTRR 611