Pairwise Alignments

Query, 642 a.a., selenocysteine-specific translation elongation factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 673 a.a., selenocysteine-specific translation elongation factor SelB (RefSeq) from Shewanella sp. ANA-3

 Score =  269 bits (688), Expect = 3e-76
 Identities = 216/638 (33%), Positives = 320/638 (50%), Gaps = 38/638 (5%)

Query: 3   VIMGTAGHIDHGKTSLVRALTGIDCDRLDEEKRRGITIELGFAFCDLPGGGRLGVVDVPG 62
           +IM TAGH+DHGK++L+RALTG++ DRL EEKRRG+TI+LG+AF  L  G RL  +DVPG
Sbjct: 1   MIMVTAGHVDHGKSTLIRALTGMNTDRLPEEKRRGMTIDLGYAFMPLRDGTRLAFIDVPG 60

Query: 63  HEKFVRNMVAGASGVDFVMLVIAADEGVMPQTREHLEICSLLGIRHGLVALTKVDMVDAD 122
           HEKF+ NM+ G S V   +LV+A D+GVMPQTREHL+I +LL +    + LTK D+VD  
Sbjct: 61  HEKFINNMLVGVSHVRHALLVLACDDGVMPQTREHLQILALLPLNSLTLVLTKRDLVDDQ 120

Query: 123 WLELAQDDVAGFLAGTFLEGAPIFPVSA--VTGQGLDTLREHLATLERELRPERRTDL-- 178
                  +    LA   +E + +F V A      G+DTL++H+  +  EL+  +  D   
Sbjct: 121 TAAKLTLEGMALLAEYGIEASGVFEVCANDAGDAGVDTLKQHILDIA-ELQSTQAEDASS 179

Query: 179 FRLPVDRVFTMRGHGTVVTGTMISGSLKVGDDVVLYPEGRTSK--VRGLQSHGGPVDKAL 236
           FR+ +DR F+++G G VVTGT+ISGS+ +GD   LY  G+ +K  VRG+   G  V +AL
Sbjct: 180 FRMTLDRAFSVKGAGCVVTGTVISGSVCIGDS--LYSSGQKAKLRVRGIHCQGMEVHRAL 237

Query: 237 AGRRTAVNLQGVDVAEVQ-RGEVLALPGTLFPAQRWDVRLTCLSSAARPLRNRTEVHFHH 295
           +G R A+NL GVD      RG+ L+      P      R      +  PL +   VH HH
Sbjct: 238 SGTRVALNLTGVDNHRAPARGDWLSS----LPQAELCARPVVQIRSFEPLTHWQNVHCHH 293

Query: 296 GAREVLARLHFHDRDRLNPGETALCQVRFTEPMVGVFGDRCVVRTFSPLRTVAGGVVVNP 355
           GA   L R+     D  +     L ++   +P++    D  V+R     +T+  G V+  
Sbjct: 294 GADHTLGRVSL--LDEADEQGRYLAEIVLDKPLLLCQDDPIVLRHIGGKQTLGAGRVLAL 351

Query: 356 TGHDLRRRDPHFADKVALLASLPEATEEELVQAHVDLSGNAGAGFVRLS-VLTD--LESK 412
              + ++R P    K+  LA L        V A +  +       +R    LTD  L + 
Sbjct: 352 KVPNRKKRTPERVSKLQQLAQLSNPVN---VLALLGQTEALSIDEIRWRWQLTDEGLAAM 408

Query: 413 RLEKVLQALGARGRLFCFDREERAYVGADALQALSAGCLDHAGAFHAKEPLKPGMARGVL 472
             +  L  LGA G            +    L+      +D    +H + P + G+ R  L
Sbjct: 409 LAQAGLTRLGAYG------------LSTQLLEQEKQQFIDLLREYHQQHPDQLGLGRNRL 456

Query: 473 ASGWGRGLHPRLIHFVVERLIKQGALVAEGDVLRLPGHKVSLASDQEGLRGKLLAIYSEA 532
                  L   L + V++ L ++G +V  G +L+L  H++ L S+ +    +L A +   
Sbjct: 457 QRMSHNVLPSELANKVLDSLCQEGQMVLRGALLQLADHRIVLDSEAQQCWQRL-APWLAQ 515

Query: 533 GMTPPNLKDVLETLSLEQKEAAPV-LKLLHDGGELVRVKDGLLFHRSALDELKGRVARWF 591
             +P  + ++ E L LE  +   +  +L+  G     VKD  L     L      V    
Sbjct: 516 QTSPVWVTEMGEYLELEPAKLRLLCFQLVQQGFITAVVKDRYLLSEQ-LCHYANLVRAHV 574

Query: 592 DDHDDLDPSGFKELSGGLSRKYIIPLLEYFDRERVTIR 629
           + H  L+ + FK+L G L RK  I LLE+FDR   T R
Sbjct: 575 ETHGKLETAEFKDLIG-LGRKVSIQLLEFFDRSGFTRR 611