Pairwise Alignments

Query, 1513 a.a., sensor/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1483 a.a., Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity (NCBI) from Rhodospirillum rubrum S1H

 Score =  451 bits (1160), Expect = e-130
 Identities = 310/875 (35%), Positives = 442/875 (50%), Gaps = 37/875 (4%)

Query: 30  VVGIGASAGGLEALEGLFRHMPTTTGAAFVVIQHLSPDFPSFMDELLARQTVMTIVVVQD 89
           VVGIGASAGGLEA + L   +P   G A +++QHL P   S M  LLA QT MT+    +
Sbjct: 41  VVGIGASAGGLEACKALLAALPDRPGIALILVQHLDPTHESMMVALLALQTTMTVCQAAE 100

Query: 90  GMCPAPDHIYLLPPGKEMEITLDGFILRDKSSYDNRPSMPINTFFASLAAWYGENAAGVV 149
           GM   PDH+Y++PPG  + +   G +        +   +P +    SLAA Y + A  VV
Sbjct: 101 GMIVEPDHLYVIPPGAYLSVA-GGTLHLSPPQARHGARLPFDFLLHSLAADYTQRAICVV 159

Query: 150 LSGTGTDGASGLEAISAAGGLVLVQLPESAAFDGMPKAAAAACRAAVLATPDEMPDILAA 209
           LSGTG DG+ GL A+   GGLV+ Q PE A +DGMP++A A  +  ++ +  ++ + L  
Sbjct: 160 LSGTGADGSLGLMALKERGGLVIAQDPEEAGYDGMPRSAIATGQVDLVLSLAKIAETLV- 218

Query: 210 FISGSPLPFEHPGLPAD-PASGGPAPDA--LQTIFTLLQRHGGLDFRDYKPATIARRIMR 266
              G  LP   P LP + P+S G       +  +  LL+     DF  YKP T+ RR  R
Sbjct: 219 ---GEDLPPGKPALPEEIPSSKGKGKGKGWVYAVIDLLRARTPYDFTHYKPGTLERRTER 275

Query: 267 RIRLE--QHADIEGYARHLRDDPQAVQTLFRDLLIGVTTFFRDETAFDTLAATVIPELFR 324
           R+ L   +  D   Y   L++D      L +DLLI VT FFRD   FD LA   IP++  
Sbjct: 276 RMTLASIEVGDSARYLALLQEDATERDLLAKDLLINVTGFFRDPKVFDVLAEKTIPQMVA 335

Query: 325 KQGDRGEIRLWVAGCASGEEAYSLGMLLLEAAPQFDFTGRISIFATDVHRHSLDRASAGV 384
                  +R+WVAGC++GEE YSL +L  EA        ++ +FA+DV   ++  A  G 
Sbjct: 336 THPLDQPLRIWVAGCSTGEETYSLAILFREAIVSAGRAVKVQVFASDVDPDAVLSAREGR 395

Query: 385 YTKDSLQALSPRRLQRFFIPEGDETYRVAPELRSLVLFTQHNILADPPFTRVDLVSCRNL 444
           Y       +S  RL RFF  +GD+ YR+ P+LRS+V+FT  ++LADPPF+R+D+VSCRNL
Sbjct: 396 YPSTIEADVSAERLARFFTRDGDD-YRILPDLRSMVVFTVQDLLADPPFSRLDMVSCRNL 454

Query: 445 LIYFGVDAQERAIARLHMALRPGGVLFMGASETTGRLHPIFEPLDPRLRIFTKRPDTLGM 504
           LIY   +AQ +AI   H ALR GG+L +G SET G +   FE L    R++ +R    G 
Sbjct: 455 LIYLRPEAQAKAIGLFHFALREGGILLLGNSETAGNVEGRFEVLSKSARLY-RRIGRGGR 513

Query: 505 TATHLVHPAV----IDAHRLATSSPQPSERQLLRDY--DALLQRFAPDGMLVDDRFAVLH 558
               L  P V      A R     P  S +  L D     +++ +AP  +L+  ++  L+
Sbjct: 514 VDLRL--PVVGGDGSGAQRRPLFEPARSRQATLADLCRRLVVEAYAPAAVLITLKYDCLY 571

Query: 559 FFGNGASYLTQHTGRTDRPITDMVEGDLRLALSSALQRASTTGETARFKSIRVPGNGGDR 618
           F G   SYL    G     +  +   ++R  L SA++ A  T         R+   G  R
Sbjct: 572 FLGAMDSYLRVAAGHPASDLLSLAREEVRTKLRSAIEMACETKTRTLVTGGRLTHGGTVR 631

Query: 619 LVDVEVMPIGNKPSDGKHYHVALQSSHPVLIRPLVEPAATGHGTGLLASRVAELEAELAE 678
              + V P+ +   DG+   +          R    P +  H     A RVAELE EL  
Sbjct: 632 GFSIAVHPVSH---DGEDLLLVCFLDEVPSERRADTPTSAEH-----APRVAELEQELEI 683

Query: 679 TRSSLRDSIEQVHVTNEELQATNEELLSANEELQATNEELHSINEELYTVNAEFERKNDQ 738
           TRS LR +I  + +++EE +A NEE LS +EE QATNEEL +  EEL ++N E    N Q
Sbjct: 684 TRSELRGAIRNLEISSEEQKAINEEALSVSEEYQATNEELLASKEELQSLNEELTALNGQ 743

Query: 739 L-------RILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGRPLQQI 791
           L       R    D   +  +  +A   LD +L +R F      +F + P D+GRPL  +
Sbjct: 744 LHETLERQRTTSNDLQNVLYSTDVATLFLDTALNIRFFTPATKLLFRVIPGDIGRPLADL 803

Query: 792 ASCLAEPDNLFKSLALGLSEGGTHDSEARLTDGRWCQQRIHAVRDETGATEHMLLTFMDI 851
           +  +A+ D L    A  L      + E     G W  +RI   R +    E +++TF DI
Sbjct: 804 SPLVAD-DALLGDAAKVLKTMTPIEREIEARSGSWYLRRILPYRTQDNGVEGVVITFADI 862

Query: 852 THVKHAEAMRQEARSLDEVSRNVPGVVFKLCAPHD 886
           T  + A   R+ A+   +++ N+    F   A HD
Sbjct: 863 TERRWAADAREVAKRQAQIA-NMAKSRFLAVASHD 896



 Score =  121 bits (304), Expect = 5e-31
 Identities = 116/384 (30%), Positives = 178/384 (46%), Gaps = 23/384 (5%)

Query: 1088 PLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANVSHELRTPLNG 1147
            P    D    G +    DIT+   A ++   A ++A+ AN  KS FLA  SH+LR PL  
Sbjct: 844  PYRTQDNGVEGVVITFADITERRWAADAREVAKRQAQIANMAKSRFLAVASHDLRQPLQT 903

Query: 1148 ALGMLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRE 1207
               +  LL       + R  +     +   +  +L+ +LD+++IE G +  E +   I +
Sbjct: 904  LTLLQGLLAKKVEGVQSRVLLARMDETLGAMSSMLNVLLDINQIEVGTVEAERVVFPIND 963

Query: 1208 LVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNLVGNAVKFTEKGGVR 1267
            L D V    +  A  K +   + ++ G    V +DP  L Q + NL+ NA+K+T++G V 
Sbjct: 964  LFDRVREELAYQARAKKLDW-SVVSCGLS--VTSDPRLLEQMIRNLLANALKYTKQGKVL 1020

Query: 1268 VEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYTRRHSGLGLGLGIVC 1327
            +       R  +  L   V D+G GIP   +E+IF  F Q++     +  GLGLGL IV 
Sbjct: 1021 L-----GCRRRSGSLSIEVWDSGIGIPPGELEAIFDEFHQVETPAQGQGRGLGLGLSIVR 1075

Query: 1328 RLMELFGGSIEVESAPDMGTAMHFAIPVG-----KTRRPQGRKVKETEDEGD-RHALYLL 1381
            RL +L G  I V S    G+     + +      K   P  R   E + + D +    +L
Sbjct: 1076 RLGDLLGHPIGVRSRLGKGSVFTINVAIAPAAAEKPSLPARRGAAEVKVDADGQRTGEIL 1135

Query: 1382 VAEDDAINRLTLTRMLEQLGHRAHAVEDGSQALQALAEQ---HFDAVFLDIQMP-VLDGM 1437
            + EDD   R  L  +L+  GHR  AV +G QA+ ALAE      D +  D  +P  ++G+
Sbjct: 1136 IIEDDPDVRDLLDLLLKGEGHRTVAVAEGGQAV-ALAEGGSIRPDLILADYNLPNGVNGL 1194

Query: 1438 ATLQAIRTGQVAGLPPTIPVVAVT 1461
                 +R      L   IPVV +T
Sbjct: 1195 GVSATLRD----VLDRPIPVVILT 1214