Pairwise Alignments

Query, 358 a.a., Ech hydrogenase, subunit EchE, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  225 bits (574), Expect = 1e-63
 Identities = 130/358 (36%), Positives = 204/358 (56%), Gaps = 6/358 (1%)

Query: 5   IIPFGPQHPVLPEPLHLKLVVEDETVVEAIPALGYVHRGLETLASIRDYNQMVYVVERVC 64
           ++P GP HP+L EPL +KL+VE E V  A   +GYVHRG+E +   + Y + +++ ERVC
Sbjct: 3   VVPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVC 62

Query: 65  GICSCIHAMCYCQSLECMMNVEVPRRAKVLRTIWSELHRIHSHLLWLGLFADGFGFESLF 124
           GICS IH   + + +E M ++EVP +AK LR I  EL RIHSHL+   ++      E+L 
Sbjct: 63  GICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLG 122

Query: 125 MQFWKVRERVMDINEATAGNRVVISTNIVGGVRRDLSPEHQKWILDEMNHLEREIRALMT 184
           +    VRE +MD+ E   GNRV +  N+VGGVR DL+ E    I  +++  E +++ ++ 
Sbjct: 123 IWMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIE 182

Query: 185 TILDDYTVCKRTKGVGVLTAQQAIQLGAVGPMLRGSGVAQDARQLQYAAFDELDFEPIAV 244
                  +  R+K +G +  ++ ++  A GP+ R SG+ +   ++++  +  L+F+P   
Sbjct: 183 VFETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIRHETYKALNFKPDWR 242

Query: 245 PDGDSWARCKVRFLEVLQSVDLVRQAISKLPDTELSVKVPGK---PEGEVVARVEQPRGE 301
            +GD++AR  VR  EVL SV+L+R+A+    ++   V+   +    EGE     E  RGE
Sbjct: 243 NEGDNYARMMVRHDEVLTSVELIRRALEHYAESSGIVRNKAEIRATEGEWYN--EAHRGE 300

Query: 302 LMYYVKGNGSKHLERVRIRTPTFANIPPL-LAIMGGLQLADVPVAVLSIDPCISCTER 358
           + Y +       ++R+ IRTPT  N+      I     +AD      SIDPC+SCTER
Sbjct: 301 VYYKIAITDGGLIKRIIIRTPTVMNLEAYKYMIKDCPTIADAVATYTSIDPCVSCTER 358