Pairwise Alignments

Query, 358 a.a., Ech hydrogenase, subunit EchE, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis JJ

 Score =  202 bits (513), Expect = 2e-56
 Identities = 127/361 (35%), Positives = 192/361 (53%), Gaps = 9/361 (2%)

Query: 6   IPFGPQHPVLPEPLHLKLVVEDETVVEAIPALGYVHRGLETLASIRDYNQMVYVVERVCG 65
           I  GP H  + EP  L+L +EDE V +A   +G  HRG+E L       +   + E++CG
Sbjct: 6   IAIGPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKICG 65

Query: 66  ICSCIHAMCYCQSLECMMNVEVPRRAKVLRTIWSELHRIHSHLLWLGLFADGFGFESLFM 125
           ICS IH     + +E   N+E+P RA  +R I  EL R+HSH L  G   +  G E++ M
Sbjct: 66  ICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSM 125

Query: 126 QFWKVRERVMDINEATAGNRVVISTNIVGGVRR--DLSPEHQKWILDEMNHLEREIRALM 183
           + + +RE +M +    +G+RV  S  I+GG+R   ++S      IL++++  E  +   +
Sbjct: 126 RCFMLREPIMQVFFEISGSRVHYSCPIIGGIRPRCNISDTQIPHILEKVSKYEEGLNKFL 185

Query: 184 TTILDDYTVCKRTKGVGVLTAQQAIQLGAVGPMLRGSGVAQDARQLQYA-AFDELDFEPI 242
             +L+D  +  R K VGV+  + A +  AVGP  RGS V  D R+  +   +D  DF+ I
Sbjct: 186 ERMLNDPMIISRVKDVGVMDRKTAAKFHAVGPTARGSNVKSDMRKWGWVPEYDPYDFDEI 245

Query: 243 AVPDGDSWARCKVRFLEVLQSVDLVRQAISKLPDT-ELSVKVPGKPEGE---VVARVEQP 298
               GD +AR  VRF E L+SV ++RQA+  L DT +  +  P     E   +    E  
Sbjct: 246 LFDSGDVFARLAVRFYECLESVKIIRQALDALKDTADKRIYNPNYELHEFKPINCYTEAQ 305

Query: 299 RGELMYYVKGNGSKHLER-VRIRTPTFANIPPLLAIMGGLQLADVPVAVLSIDPCISCTE 357
           RGE  YY  G   + L R  +IRTPT  N+  +  I+ G  ++D  + + S DPC +CT+
Sbjct: 306 RGE-QYYSYGLDDEGLVRQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTD 364

Query: 358 R 358
           R
Sbjct: 365 R 365