Pairwise Alignments

Query, 372 a.a., GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 557 a.a., diguanylate cyclase (RefSeq) from Shewanella amazonensis SB2B

 Score =  130 bits (326), Expect = 1e-34
 Identities = 111/357 (31%), Positives = 174/357 (48%), Gaps = 47/357 (13%)

Query: 9   FSNGLSHAPQPEAIHHVGVANMFNAVTMVFCLSLAFFDWMQGYGGMALLLCGIAALALFS 68
           F  GLSH  Q     H  +  ++    ++F L     D ++ +  ++ ++ G+A L + +
Sbjct: 233 FWPGLSHWRQWS---HPMLMTLYCVSGLMFALRFLGIDKLRPH--LSYIVLGLAVL-MMT 286

Query: 69  MLHLGRTGKRSNINLLLALALIGVDWWLMATGGVAGMGHLWVFSLPPLLLF---TFGLRR 125
           +  +  T     + L+ A   + +   LM   G+      W+  LP   LF   +     
Sbjct: 287 VQGVAMTTDDRELGLIFAFDFVYIFTLLMPLLGILA----WLHGLPTARLFLLASLSTMV 342

Query: 126 GGMLVALLVFGIICI---LYGPEELSPFEYGDSFAPRYLLALTASISLVSVAEAARRHSE 182
           G     L V G I      Y   E+  F             + A +  +++A   R+  +
Sbjct: 343 GSCTTGLAVEGYISFNQWTYRAAEIGMF-------------IDAMLLALALAAQFRQSEQ 389

Query: 183 RRLLALTHQLAFCARSDPLTGLANRRSLCERFEQ----ERQRSLRNNTPLSLILCDIDHF 238
            R+LA   QLA    +DPLTG+ANRR+  E+ ++    + QR  R     +LI+ DID F
Sbjct: 390 ERVLA--QQLA---ATDPLTGIANRRAFSEQLQRLWHLDSQRRCR-----ALIMIDIDRF 439

Query: 239 KTINDTHGHECGDYVLRKLADMLRTNMRAQDTVCRWGGEEFLLLLPDTDEKGATRLAEKL 298
           K+INDT GHE GD VL  +A ++R ++R +D   RWGGEEF++LL    E+ A  +AE++
Sbjct: 440 KSINDTLGHEVGDKVLTDIARVIRYSIRNRDQCGRWGGEEFVVLLASASEEEAGIIAERI 499

Query: 299 RTLTESYPFSYHGIPIRVTLCFGVHQCSREGHTDYH--IRKADRKLYMAKEQGRNRV 353
           R   ES  F      ++VT   GV  C  EGH+ +   +R+AD  +Y AK+ G NRV
Sbjct: 500 RHNIESLSFPAPANKLKVTASVGV--CLDEGHSRHEDILRRADEAMYHAKDAGGNRV 554