Pairwise Alignments

Query, 715 a.a., response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  338 bits (868), Expect = 5e-97
 Identities = 185/449 (41%), Positives = 279/449 (62%), Gaps = 5/449 (1%)

Query: 263 SDSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELTGLLNRFGMRQHVDRLIVGGQM-- 320
           +DS+G+V+G +  F D +E      ++ H A HD+LT L NR  +   ++          
Sbjct: 363 TDSEGKVTGGIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRILLHDRINHACAVADSYD 422

Query: 321 -SFALLVIDLDDFKTINDSLGHALGDRLLHKAAERIVELVGSQGIVGRPGGDEYVVLLYN 379
            S AL++ID+D FK +NDSLGH+ GD+++ + A+R+  L+     +GR GGDE+V+LL +
Sbjct: 423 KSVALMLIDIDHFKYLNDSLGHSYGDQVIKQVAKRLQSLIDPNATLGRIGGDEFVLLLPS 482

Query: 380 VDAEA-AHAMARRILDIFTDSLSVSGHEVYISLSIGIAVYPEDGDDAANLFKCCDIAMYR 438
           + A +   ++A  I+        + G E  +S+S+GI++YP D   A  L    D AMYR
Sbjct: 483 LTATSQVDSIATDIVRSLNTPFRIDGQEYTLSVSVGISIYPSDALRAEELMTHVDAAMYR 542

Query: 439 AKEEGGARAQRYLAAMQDVITSRLALEKNLRKALERGEFVLHYQPKVDIRTGAVTGMEAL 498
           AK+ G  R   +   ++  +T R  L   LR A++     ++YQPKVD++T  + G EAL
Sbjct: 543 AKDLGRNRFCYFSEDLEQELTKRHELVTLLRTAIDTEAIEVYYQPKVDLKTKEIIGAEAL 602

Query: 499 VRWVRDDGTIVPPQDFIPVAEKTGLIVALGEFVLREACRQMHAWQKRFGRLKMAVNISAR 558
            R     G ++ P DFIP+AE+TGLI  LGE +L+++C    AWQKR   L++AVNI+A+
Sbjct: 603 ARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILKQSCMAAKAWQKRGRPLQIAVNIAAK 662

Query: 559 QF-QPGLPDTVASALADAGLDPGLLELEITETTMMRDLALTVSVLERLTTGGIAVAIDDF 617
           QF  P   D+VA  L   GLD   LELE+TE+++M D    ++VL  L++ G+++AIDDF
Sbjct: 663 QFTNPEFCDSVAKVLELTGLDSSFLELEVTESSLMYDFDEALNVLNTLSSLGLSIAIDDF 722

Query: 618 GTGHSSLYYLKTFPISSIKIDRSFVRDIPNDETDATIVTTVVSMGRNLGIGIVAEGVETE 677
           GTG+SSL YLK FP++++KID+SFV+D+  DE    IV  V+ + ++L + ++AEG+E  
Sbjct: 723 GTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQSLDIVKAVIHLAKSLKLKLIAEGIEDA 782

Query: 678 AQLDFLRSLECPEVQGYYFSKPLPPHAFE 706
            QL  L +LEC + QGY FSKPLP   F+
Sbjct: 783 EQLQKLVALECEQGQGYMFSKPLPLKEFD 811



 Score = 62.0 bits (149), Expect = 1e-13
 Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 44/303 (14%)

Query: 7   RILCIDDDDADRMNLVAYLEDSGYIVLEAANGRAGLDVFRAEHPDLILVDLRMPVMGGME 66
           +IL +DD+ A+   L   L D   I+  +  G+  LD      P +IL+D+ MP M G E
Sbjct: 12  KILVVDDESANLHLLEQSLTDLAEIIC-STGGQDALDKAEQHQPAIILLDIEMPQMNGFE 70

Query: 67  VVAHMREEAPGVPVIVVSGAGILEEAVE--ALRRGAWDYVTKPVLDMRVLEHAVMKALER 124
           +   ++         V+      E + E  +L  G  D++ KP                 
Sbjct: 71  MCKRLKNNPKTCNSAVIFVTAHSESSFEYKSLSSGGIDFIHKP----------------- 113

Query: 125 ARLLDERQRYQERLEFEVEARTRELRVSNEQLRSTQSE-LEDKSLFLETLIESLPNPLFY 183
                            ++  T  LRV N  L   Q + + +    ++ L+  +P+ + Y
Sbjct: 114 -----------------IDLATCRLRVKNHLLLKRQEQTIIEARQDMQALVNQIPSYISY 156

Query: 184 KTLDGVYIGCNKAFSQLLGIPREKMVGRSARDLLPDHAYAQIIAGDCPSGSDAGEHSCVF 243
            + D +    N    +  G   +  +G+ A  LLP   Y +I+A      S+  +H    
Sbjct: 157 WSKDLLNRFHNDYNGRWFGTIPQDALGKPASSLLPKALYEEILA---RIASNKPKHQFEV 213

Query: 244 DILGADGHIHTLALYKSTYSDSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELTGLLN 303
            +    G I   A    T     G V+G++ T  DIT +KR ++Q+     +  L  +LN
Sbjct: 214 ALEDTPGKI-DYAQAHLTIRKQDGHVAGMLLTLTDITSIKRAKSQL--DTENRRLKIMLN 270

Query: 304 RFG 306
             G
Sbjct: 271 AIG 273