Pairwise Alignments

Query, 715 a.a., response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 896 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  424 bits (1090), Expect = e-122
 Identities = 240/527 (45%), Positives = 326/527 (61%), Gaps = 6/527 (1%)

Query: 187 DGVYIGCNKAFSQLLGIPREKMVGRSARDLLPDHAYAQIIAGDCPSGSDAGEHSCVFDIL 246
           +G+ +  N AF+ + G P +  VG+S R L   H  +        +  + G         
Sbjct: 352 EGIIVAVNPAFTTITGYPADDAVGQSPRLLKSHHHDSAFYEDMWRALVEEGRWEDEIWNR 411

Query: 247 GADGHIHTLALYKSTYSDSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELTGLLNRFG 306
             +G ++   L  S      G+    V  F DITELK KE+QI HQA HD LTGL NR  
Sbjct: 412 RRNGEVYPEWLSISAIPGPTGRTEYYVAVFHDITELKAKESQIQHQAHHDALTGLPNRAL 471

Query: 307 MRQHVDRLIVGGQMS---FALLVIDLDDFKTINDSLGHALGDRLLHKAAERIVELVGSQG 363
           +R  +   I G +      A+L +DLD+FK +NDSLGH +GD  L +AAE++ ++V  Q 
Sbjct: 472 LRDRLGMAINGARREDRKVAVLSVDLDNFKQVNDSLGHMVGDIYLQQAAEQMRQMVRPQD 531

Query: 364 IVGRPGGDEYVVLLYNVDAEA-AHAMARRILDIFTDSLSVSGHEVYISLSIGIAVYPEDG 422
            + R GGDE+VV+L +V+ E  A  +A R+L  FTD + V  HE+++  S+GIA++P+DG
Sbjct: 532 TLARVGGDEFVVVLQDVEGERDAAQVAERLLARFTDPVRVQEHELFVGASVGIALFPDDG 591

Query: 423 DDAANLFKCCDIAMYRAKEEGGARAQRYLAAMQDVITSRLALEKNLRKALERGEFVLHYQ 482
           DD   L +  DIAM RAKE+G  R   +  AM D    RL+LE +L +AL  G+   HYQ
Sbjct: 592 DDPDTLVRNADIAMSRAKEQGKRRYHLFTPAMNDRAVRRLSLEGDLHRALAAGDITAHYQ 651

Query: 483 PKVDIRTGAVTGMEALVRWVRDDGTIVPPQDFIPVAEKTGLIVALGEFVLREACRQMHAW 542
           P+VD+ TG +TGMEAL RW+R DG+   P +FIP+AE TGLIV LGE +LR AC +  A 
Sbjct: 652 PRVDLNTGLITGMEALARWIRADGSQEHPAEFIPLAESTGLIVPLGEHMLRLACAKTRAL 711

Query: 543 -QKRFGRLKMAVNISARQFQP-GLPDTVASALADAGLDPGLLELEITETTMMRDLALTVS 600
                  L +AVN+S  QF+   L   VA  LA+ GL P LLELEITE+T++ D+  T+ 
Sbjct: 712 CDAGHADLHVAVNLSVHQFRHRNLVGMVADVLAETGLPPHLLELEITESTIVTDVDHTIR 771

Query: 601 VLERLTTGGIAVAIDDFGTGHSSLYYLKTFPISSIKIDRSFVRDIPNDETDATIVTTVVS 660
            L +L   GIA+++DDFGTG+SSLY LK  P++S+KIDRSF+RDIP+D  DA I  T+++
Sbjct: 772 KLNQLAEMGIALSVDDFGTGYSSLYQLKNLPLTSLKIDRSFIRDIPDDPNDAAIAATIIT 831

Query: 661 MGRNLGIGIVAEGVETEAQLDFLRSLECPEVQGYYFSKPLPPHAFEA 707
           M   LG+ +VAEGVET  QL+FL    C EVQG+ FS+PLPP  F A
Sbjct: 832 MADRLGLRVVAEGVETPEQLNFLLLEGCHEVQGFLFSRPLPPDEFTA 878



 Score = 39.3 bits (90), Expect = 9e-07
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 170 LETLIESLPNPLFYKTLDGVYIGCNKAFSQLLGIPREKMVGRSARDLLPDHAYAQIIAGD 229
           L  L+++    LF +  +G Y+  N  ++ L G+P + +VG S RD+ P    + ++  D
Sbjct: 51  LRALLDNPLVALFLRDGEGRYLAANHLYADLAGVPGKDVVGLSPRDIFPHAVASALLDED 110

Query: 230 CPSGSDAGEHSCVFDILGADGHIHTLALYKSTYSDSQGQVSGIVGTFLDITELKRKEAQ 288
                D+    C   +L AD       + K            ++G   D+T L   E +
Sbjct: 111 RRVAEDSTPLLCE-RMLPADEAERVFRVAKLPLPPEVAGPGAVLGLAFDVTALVEAEIE 168



 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 154 EQLRSTQSELEDKSLFLETLIESLPNPLFYKTLDGVYIGCNKAFSQLLGIPREKMVGRSA 213
           E++R   + L + +     L E  P+ ++ +   G  + CN+A  ++ G PRE ++    
Sbjct: 169 EEVRQRTAALAESTARFRALFELAPDAVYVRGEGGRIVDCNRAAERMSGHPRETLLSLRT 228

Query: 214 RDLLPDHAYAQI--IAGDCP 231
            DLLP     +I  +   CP
Sbjct: 229 ADLLPPDIEVRIDNLLTGCP 248