Pairwise Alignments

Query, 715 a.a., response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  342 bits (878), Expect = 6e-98
 Identities = 189/456 (41%), Positives = 276/456 (60%), Gaps = 5/456 (1%)

Query: 264  DSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELTGLLNRFGMRQHVDRLIVGGQMS-- 321
            D +G+ S  V  F DITE K+ E  +   A+ D LTGL NR   +  ++  I     S  
Sbjct: 1050 DVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNN 1109

Query: 322  -FALLVIDLDDFKTINDSLGHALGDRLLHKAAERIVELVGSQGIVGRPGGDEYVVLLYNV 380
              ALL +DLD FK INDS+GH +GD LL   A R+   V     V R GGDE+ ++L  V
Sbjct: 1110 IVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGV 1169

Query: 381  -DAEAAHAMARRILDIFTDSLSVSGHEVYISLSIGIAVYPEDGDDAANLFKCCDIAMYRA 439
               +AA  ++ ++L  F     +    + IS SIGI++YP D +D  +L K  D AMY A
Sbjct: 1170 AKTKAATLISEKVLKAFQAPFLLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHA 1229

Query: 440  KEEGGARAQRYLAAMQDVITSRLALEKNLRKALERGEFVLHYQPKVDIRTGAVTGMEALV 499
            K  G    Q Y   + ++ T  + LE  L++A+ R E  L YQPK  +R G++TG+EAL+
Sbjct: 1230 KALGRNNFQFYTNKLNEMATRHVQLEAGLKQAISRNELSLVYQPKFCLRKGSLTGLEALL 1289

Query: 500  RWVRDDGTIVPPQDFIPVAEKTGLIVALGEFVLREACRQMHAWQKR-FGRLKMAVNISAR 558
            RW   +   + P +FIP+AE+TG+I  +G +V+  AC+Q+  W +  FG + MAVN+SAR
Sbjct: 1290 RWHHSELGPISPAEFIPLAEETGIINQIGHWVINHACQQLAEWNELGFGDISMAVNLSAR 1349

Query: 559  QFQPGLPDTVASALADAGLDPGLLELEITETTMMRDLALTVSVLERLTTGGIAVAIDDFG 618
            Q +  +  T+  AL+ +GL    LELE+TE+ +M +   +V++L +L   G+ +A+DDFG
Sbjct: 1350 QLKADIISTIEVALSVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFG 1409

Query: 619  TGHSSLYYLKTFPISSIKIDRSFVRDIPNDETDATIVTTVVSMGRNLGIGIVAEGVETEA 678
            TG+SSL YLK FPI ++KIDR FVRDI ND  DA I + ++++  +L + +VAEGVET+ 
Sbjct: 1410 TGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQE 1469

Query: 679  QLDFLRSLECPEVQGYYFSKPLPPHAFEAWMENRLR 714
            QL+FL    C +VQG+  SKPL      A ++ R++
Sbjct: 1470 QLNFLALQGCDQVQGFLLSKPLSAQDCLALLQQRIK 1505