Pairwise Alignments

Query, 715 a.a., response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1433 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  344 bits (882), Expect = 2e-98
 Identities = 207/565 (36%), Positives = 326/565 (57%), Gaps = 10/565 (1%)

Query: 141  EVEARTRELRVSNEQLRSTQSELEDKSLFL-ETLIESLPNPLFYKTLDGVYIGCNKAFSQ 199
            E + +   LR++      +Q + +++ L L E  IE++   +F    +  ++  N+A  +
Sbjct: 851  ERDDKDNALRMTGTIKNISQFKQKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCR 910

Query: 200  LLGIPREKMVGRSAR-DLLPDHAYAQIIAGDCPSGSDAGEHSCVFDILGADGHIHTLALY 258
            +    R   +G     DL P+    QI       G  A E   V    G + H H     
Sbjct: 911  ISQRNRTDFIGNLLTFDLYPESFSNQIRTMLKQQGRWASE---VEASRGDNSHFHMELTI 967

Query: 259  KSTYSDSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELTGLLNRFGMRQHVDRLIVGG 318
             + Y D  G++S  VG F DI+  K++E ++     +D LTGL NR  ++  +  L V  
Sbjct: 968  DAIY-DELGELSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNL-VNK 1025

Query: 319  QMSFALLVIDLDDFKTINDSLGHALGDRLLHKAAERIVELVGSQGIVGRPGGDEYVVLLY 378
            +++ AL+V+DLD+FK INDSLGH +GD+LL   + RI  ++     + R GGDE+ ++L 
Sbjct: 1026 EITHALMVLDLDNFKRINDSLGHQIGDQLLKLVSIRIKSILPKNTSIYRLGGDEFAIVLD 1085

Query: 379  NV-DAEAAHAMARRILDIFTDSLSVSGHEVYISLSIGIAVYPEDGDDAANLFKCCDIAMY 437
               D  A+ A+A R+++ F     +   ++ + +SIGI  YPED      L +  DIAMY
Sbjct: 1086 KTSDISASAAIAGRVIEAFKTMFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMY 1145

Query: 438  RAKEEGGARAQRYLAAMQDVITSRLALEKNLRKALERGEFVLHYQPKVDIRTGAVTGMEA 497
             AK  GG   Q Y  ++      +L +E  +R+ L+   F ++YQPKVD+++G V GMEA
Sbjct: 1146 HAKSAGGNCYQFYSESLNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEA 1205

Query: 498  LVRWVRDDGTIVPPQDFIPVAEKTGLIVALGEFVLREACRQMHAWQKR-FGRLKMAVNIS 556
            LVR       ++PP DFIP+AE+ GLI+ +GE VLR+AC     W+++   + ++AVN+S
Sbjct: 1206 LVRLNHPTRGLIPPNDFIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKGRVAVNLS 1265

Query: 557  ARQFQ-PGLPDTVASALADAGLDPGLLELEITETTMMRDLALTVSVLERLTTGGIAVAID 615
            +RQF  P L   + S L    L    LELEITE T+++   + ++V+++L   G+++A+D
Sbjct: 1266 SRQFALPDLQQRIESILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALD 1325

Query: 616  DFGTGHSSLYYLKTFPISSIKIDRSFVRDIPNDETDATIVTTVVSMGRNLGIGIVAEGVE 675
            DFGTG+SSL YLK FPI ++KID++FV DI   + D  +V +++++  N+G+ +V EGVE
Sbjct: 1326 DFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVE 1385

Query: 676  TEAQLDFLRSLECPEVQGYYFSKPL 700
              AQL+ LR+L C E+QGY FSK +
Sbjct: 1386 QAAQLNILRALNCEEIQGYIFSKAI 1410