Pairwise Alignments

Query, 340 a.a., radical SAM domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 385 a.a., Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB from Xanthomonas campestris pv. campestris strain 8004

 Score = 57.0 bits (136), Expect = 8e-13
 Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 11/191 (5%)

Query: 16  LPVFLPFAGCPQRCVFCAQDAQTGQSVEPVADVLRRVDAILEERARH-----NRPAVEIA 70
           L V LP+  C ++C +C  ++   +   P  D    VDA++ +          R    + 
Sbjct: 11  LYVHLPW--CVRKCPYCDFNSHAAKGAPPFDDY---VDALIRDLDADLPLVWGRVVHSVF 65

Query: 71  FYGGTFSALPEDDQHACLALAARWRERGMVVAVRCSTRPDALPPGKAEALAGLGMNLIEL 130
           F GGT S  P +     L  AA        + +   T P     G+ +     G+N +  
Sbjct: 66  FGGGTPSLFPPEAIDRFLQAAAARLRFAPNLEITLETNPGTAEHGRFDGYRAAGVNRLSF 125

Query: 131 GVQTFDDTALAHAGRGCHGDDALTAARRVRDAGL-GLGLQLLPGMPGVTPDIFRADMKVV 189
           GVQ+FDD AL   GR     +A  A +  +DAG     + L+  +P  T      D++  
Sbjct: 126 GVQSFDDAALQRLGRIHDSAEAERAIKLAQDAGYDNFNIDLMYALPEQTLAQAEHDLERA 185

Query: 190 ASLRPDCLRLY 200
            +L+P  L  Y
Sbjct: 186 FALQPTHLSHY 196