Pairwise Alignments

Query, 224 a.a., amino acid ABC tranporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 218 a.a., glutamine ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  134 bits (338), Expect = 1e-36
 Identities = 80/216 (37%), Positives = 122/216 (56%), Gaps = 2/216 (0%)

Query: 3   DPDF-VFGEMLPALNRGLITSMMLIVPSATLGLLFGIIVGTGRVFGPAWVRKAGDIYTAT 61
           D DF V  + LPAL  G   ++++       G L G++ G  R +G   ++  G  Y   
Sbjct: 2   DFDFSVITDSLPALLEGAKVTVLITAAGLVGGTLVGLLAGLMRAYGNTLLKGIGFGYVEF 61

Query: 62  FRGVPLVVQLMIIYFGLPNI-GIYLEPFPAAVLGFVLCSAAYNSEYVRGALLSIRQGQLK 120
            RG P+VVQ+M IYF LP + GI ++P  AAV   V+ S AY +E VRGA LS+ +G  +
Sbjct: 62  VRGTPIVVQVMFIYFALPVLLGIRVDPMTAAVTSIVVNSGAYIAEIVRGAFLSVPRGLRE 121

Query: 121 AAQALGFSKLKTVLFIVVPQAVRRALPGCGNEIIYLIKYSSLAYVITCIELTGEGKVVAA 180
           A  ALG    + + F++ P A+RR +P  GN+ I  +K +SL  VI   ELT +G+ + A
Sbjct: 122 AGLALGLPVWRVLAFVIGPVAIRRMVPAMGNQFIVSLKDTSLFIVIGVGELTRQGQEIMA 181

Query: 181 RSFRFTEVFLFVGAYYLFLVTLASWILHRVEQHFSI 216
            +FR  E+++ V A YL ++ + ++ L   E+   I
Sbjct: 182 ANFRAVEIWIAVAAIYLCMIGVMTYALRTFEKRMRI 217