Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 886 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  140 bits (353), Expect = 2e-37
 Identities = 134/497 (26%), Positives = 203/497 (40%), Gaps = 46/497 (9%)

Query: 115 HLQRPGHAQRACILHLRIDNAMKTIEGWVMDVTELDHRKEGLRDAHRFLQNVVDALPCPL 174
           HL+     + A  + L +  A   +   + D+ + D  +  LR +   L+ +  A+P  L
Sbjct: 156 HLRFVAAQEAALPMLLALPLATAALGLLLNDLLKRDQVERALRLSEARLRAITHAIPDLL 215

Query: 175 FFKDMNGAYTLFNHAFSDMLGLTPENLQGKNADDIAPPDLAAVYHSMDQALLDAKGPASQ 234
              D +G Y     A   ML   P  L G++  D+ P      +    +  L++  P  Q
Sbjct: 216 LVIDEDGCYLDIICADHSMLYADPSLLLGRHLRDMMPEAEERRFLDFIRQTLNSDTP--Q 273

Query: 235 RYESAFTTPHGLRHVLFDKATVVDDEGTARGLVGIITDITGRKQAEDALRRVEARIRALV 294
             E +  T  G R        +    G  R +V +  DIT R   E     +E RI A+ 
Sbjct: 274 LIEYSMQTLGGPRIFEGRALPLEQPPGQKRAVVWLSRDITDRVNTE-----LERRIAAIA 328

Query: 295 HNASDGFFSVTPEGYITESNPAMCKLLGLKVAPSSGERGELTCVAPDDDESSDANRAQNI 354
             +  G      +  I   N A  ++ G     + G+    T +       S+  RA   
Sbjct: 329 FESQQGMLITDGQNRILRVNRAFSRISGFSAEEAVGKT---TALLASGKHGSEFYRA--- 382

Query: 355 LNLPDMFA--EGREAWDAALHRLGTGAPPAPFEVRVRRDDGQTV--WLSLALWPVDSVPE 410
                M+A  E    W+               E+  RR  G+    WL+++     +V  
Sbjct: 383 -----MWASIEATGVWEG--------------EIWNRRKSGEIFPEWLTIS-----AVRN 418

Query: 411 EDGPPPAVEGMAHDITAHKLAEMDLTRRIVTDPLTGLFNRAHMEDMLPRMLTRAAEDGRT 470
             G          DIT  K AE  +      DPLTGL NR  + D L + +      G+ 
Sbjct: 419 LTGDISHYVAAFTDITDRKAAEERIHNLAFYDPLTGLPNRRLLLDRLQQAMAAGCRSGQL 478

Query: 471 LGLLFIDLDGFKAVNDTYGHAVGDTLLQQVAGRLRRRLRHTDIAIRLGGDEFAVLLWDVA 530
             L+FIDLD FK +ND +GH  GD +L+  A RL+  +R +D   RLGGDEF V+L ++ 
Sbjct: 479 GALMFIDLDNFKNINDLHGHQTGDQVLRIAAERLQGEIRASDTVARLGGDEFVVMLENLG 538

Query: 531 -----GKEAVERIGAGILSIMAPAFTCTDIPCSVSASIGASLYPQHADDAPSLLRLADEA 585
                     E IG  +L  +   +   D+    SASIG  L+      +  L++ AD +
Sbjct: 539 DAPELAATQAEHIGMKLLGSLGKPYRLNDLGLYSSASIGVVLFGTDGSSSDELMKRADMS 598

Query: 586 MYRAKAEGKNRMAFAGP 602
           MY AK  GKN + F  P
Sbjct: 599 MYEAKVAGKNALRFFDP 615