Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1494 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  151 bits (381), Expect = 2e-40
 Identities = 125/400 (31%), Positives = 179/400 (44%), Gaps = 44/400 (11%)

Query: 207  DDIAPPDLAAVYHSMDQALLDAKGPASQRYESAFTTPHGLRHVLF--DKATVV--DDEGT 262
            D I P D   V H+++Q +  ++      YE+ +   +   H ++  D+  VV  D +G 
Sbjct: 864  DRIHPEDKPRVLHAIEQHIDGSRA----FYEAEYRIENKPGHWIWITDRGKVVERDKQGK 919

Query: 263  ARGLVGIITDITGRKQAEDALRRVEARIRALVHNASDGFFSVTPEGY---ITESNPAMCK 319
               +VG   DIT RK AE+ LR + A++ A ++ A      V   G    I   NPA   
Sbjct: 920  PVRMVGTHKDITSRKNAENELR-LSAQVLASMNEA------VVVGGLDYRIASVNPAFSL 972

Query: 320  LLGLKVAPSSGERGELTCVAPDDDESSDANRAQNILNLPDMFAEGREAWDAALHRLGTGA 379
            + G       G+               +A   Q + N         + W   L       
Sbjct: 973  ITGFNPEQVQGKHFLFLTHDRKQRHIYEAIEQQLLRN---------KHWAGEL------- 1016

Query: 380  PPAPFEVRVRRDDGQTVWLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTRRI 439
                 ++R R      +WL      ++ V +          +  DIT  K AE DL    
Sbjct: 1017 -----KIRTRDQRAILIWLE-----INQVLDSKAEASHFVAVFTDITDRKKAEEDLRLLA 1066

Query: 440  VTDPLTGLFNRAHMEDMLPRMLTRAAEDGRTLGLLFIDLDGFKAVNDTYGHAVGDTLLQQ 499
              DPLT L NR   +D L   L +A   G  + LLF+DLD FK +ND+ GH +GD LL+ 
Sbjct: 1067 SYDPLTNLPNRTLFQDRLDHALAQAHRTGNMVALLFLDLDRFKHINDSMGHHIGDLLLKA 1126

Query: 500  VAGRLRRRLRHTDIAIRLGGDEFAVLLWDVAGKEAVERIGAGILSIMAPAFTCTDIPCSV 559
            VA RL+  +R  D   RLGGDEF ++L  VA  +A   I   ++      F   D   ++
Sbjct: 1127 VAHRLQNCVREGDTVARLGGDEFTIILEGVAKTKAATVIAEKLIRAFQTPFILEDQALNI 1186

Query: 560  SASIGASLYPQHADDAPSLLRLADEAMYRAKAEGKNRMAF 599
            S SIG SLYP  A D+ SL++ AD AMY AK+ G+N   F
Sbjct: 1187 SPSIGISLYPMDASDSTSLVKYADTAMYHAKSLGRNNFQF 1226



 Score = 38.5 bits (88), Expect = 2e-06
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 187  NHAFSDMLGLTPENLQGKNADDIAPPDLAA-VYHSMDQALLDAKGPASQRYESAFTTPHG 245
            N AFS + G  PE +QGK+   +        +Y +++Q LL  K  A +      T    
Sbjct: 967  NPAFSLITGFNPEQVQGKHFLFLTHDRKQRHIYEAIEQQLLRNKHWAGEL--KIRTRDQR 1024

Query: 246  LRHVLFDKATVVDDEGTARGLVGIITDITGRKQAEDALR 284
               +  +   V+D +  A   V + TDIT RK+AE+ LR
Sbjct: 1025 AILIWLEINQVLDSKAEASHFVAVFTDITDRKKAEEDLR 1063