Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  171 bits (434), Expect = 1e-46
 Identities = 170/612 (27%), Positives = 275/612 (44%), Gaps = 57/612 (9%)

Query: 9   IIALVAVVVGVRLGRRRARPRPASPDTQPDTP-PVLFDDLPVGVFRSTLDGEHLLYANTS 67
           I  +V  ++G+ L RR    R A    Q D      F+   +G+  +++D +H +  N  
Sbjct: 174 IFPIVTALLGMMLARRLEVERDAKIQLQDDFIFRSQFNVGNMGIAITSVD-QHWIKVNPR 232

Query: 68  LAHLFGWPDAGAMIEGQTP----RDLYASPTARDDILQRLQQAGEMTTDVIHLQRPG--- 120
           L  +  + +   +    T      DL A  T    +L+    A EM  D   + + G   
Sbjct: 233 LCKMLKYSETELLNRTWTELTYFEDLKADMTQFQRMLKGEIDAYEM--DKRFVAKDGEIV 290

Query: 121 --HAQRACILHLRIDNAMKTIEGWVMDVTELDHRKEGLRDAHRFLQNVVDALPCPLFFKD 178
             H   AC    R  N +  +   ++D+TE       +R +   L  V+++    ++  D
Sbjct: 291 YTHLTVAC---RRNHNMVDMVIAGLIDITEHKRADMAMRTSQERLALVLESSDLGMWDWD 347

Query: 179 MNGAYTLFNHAFSDMLGLTPENLQGKNA---DDIAPPDLAAVYHSMDQALLDAKGPASQR 235
           +    T  N   + +LG   E L   +    D I P D  AV +S+D+ L   KG   + 
Sbjct: 348 IKSNETKRNPWCAKVLGCDLERLNRDSRIWIDAIHPQDRMAVLNSIDRHL---KGETQKH 404

Query: 236 Y-ESAFTTPHGLRHVLFDKATVV--DDEGTARGLVGIITDITGRKQAEDALRRVEARIRA 292
           Y E    +  G  H + D   VV  D  G    + G+ +DIT +K+ +++L      + A
Sbjct: 405 YIEYRLISLSGEEHWILDTGKVVSRDRNGLPTRMCGVHSDITEQKKVQESLE-----LAA 459

Query: 293 LVHNASDGFFSVTP-EGYITESNPAMCKLLGLKVAPSSGERGELTCVAPDDDESSDANRA 351
            V+N S    SV   +G+I   N A   + G     +  +   +        +SS   R+
Sbjct: 460 SVYNNSSEAMSVQDHKGHIITINAAFTAITGYSQEEALTQNIRIL-------QSSRTPRS 512

Query: 352 QNILNLPDMFAEGREAWDAALHRLGTGAPPAPFEVRVRRDDGQTVWLSLALWPVDSVPEE 411
           Q             +  ++A+    TG       ++ +  +   VWL+     ++++ ++
Sbjct: 513 QY------------DEMNSAIR--DTGYWQGELWIKNKSGEEYMVWLT-----INTIFDQ 553

Query: 412 DGPPPAVEGMAHDITAHKLAEMDLTRRIVTDPLTGLFNRAHMEDMLPRMLTRAAEDGRTL 471
            G       +  DIT  K AE  + ++   DPLTGL NR  + + L   + R   +    
Sbjct: 554 HGQVYRRVALFSDITEKKEAEHIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHF 613

Query: 472 GLLFIDLDGFKAVNDTYGHAVGDTLLQQVAGRLRRRLRHTDIAIRLGGDEFAVLLWDVAG 531
            L+F+DLD FK VNDT GH +GD LLQ+ A RL+  +R +D+  RLGGDEF V+L  +  
Sbjct: 614 ALMFLDLDFFKEVNDTLGHDMGDLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSGIDS 673

Query: 532 KEAVERIGAGILSIMAPAFTCTDIPCSVSASIGASLYPQHADDAPSLLRLADEAMYRAKA 591
              VER+   IL  +A  ++  D    +SASIG ++YP  A     LL+ AD+AMY AK 
Sbjct: 674 PSGVERVAQSILERIAEPYSLGDETAYISASIGITIYPDDATSIEGLLKHADQAMYAAKE 733

Query: 592 EGKNRMAFAGPS 603
           +G+NR  +  PS
Sbjct: 734 QGRNRFHYFTPS 745