Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 896 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  154 bits (389), Expect = 2e-41
 Identities = 163/606 (26%), Positives = 245/606 (40%), Gaps = 82/606 (13%)

Query: 43  LFDDLPVGVFRSTLDGEHLLYANTSLAHLFGWPDAGAMIEGQTPRDLYASPTARDDILQR 102
           L D+  V +F    +G +L  AN   A L G P  G  + G +PRD++    A   +L  
Sbjct: 54  LLDNPLVALFLRDGEGRYLA-ANHLYADLAGVP--GKDVVGLSPRDIFPHAVA-SALLDE 109

Query: 103 LQQAGEMTTDVI--HLQRPGHAQRAC-ILHLRIDNAMK---TIEGWVMDVT--------- 147
            ++  E +T ++   +     A+R   +  L +   +     + G   DVT         
Sbjct: 110 DRRVAEDSTPLLCERMLPADEAERVFRVAKLPLPPEVAGPGAVLGLAFDVTALVEAEIEE 169

Query: 148 ELDHRKEGLRDAHRFLQNVVDALPCPLFFKDMNGAYTLFNHAFSDMLGLTPENLQGKNAD 207
           E+  R   L ++    + + +  P  ++ +   G     N A   M G   E L      
Sbjct: 170 EVRQRTAALAESTARFRALFELAPDAVYVRGEGGRIVDCNRAAERMSGHPRETLLSLRTA 229

Query: 208 DIAPPDLAAVYHSM------DQALLDAKGPASQRY-------------------ESAFTT 242
           D+ PPD+     ++        A      PA  R                    E   T 
Sbjct: 230 DLLPPDIEVRIDNLLTGCPLPVATHPDSTPAEPRQGTDGANPGSGFCPTGGFCMEGICTA 289

Query: 243 PHGLRHVLFDKATVVDDEGTARGLVGIIT--DITGRKQAEDALRRVEARIRALVHNASDG 300
            HG          +       +G+  ++   DI+GR+ AE   R  E   R    NA +G
Sbjct: 290 AHGPHEAEVSVEPLPLSLLRGKGMTALVVVHDISGRRTAERQARLFERVFR----NALEG 345

Query: 301 FFSVTPEGYITESNPAMCKLLGLKVAPSSGERGELTCVAPDDDES-SDANRAQNILNLPD 359
                PEG I   NPA   + G     + G+   L      D     D  RA        
Sbjct: 346 ICITDPEGIIVAVNPAFTTITGYPADDAVGQSPRLLKSHHHDSAFYEDMWRA-------- 397

Query: 360 MFAEGREAWDAALHRLGTGAPPAPFEVRVRRDDGQTV--WLSLALWPVDSVPEEDGPPPA 417
           +  EGR  W+               E+  RR +G+    WLS++     ++P   G    
Sbjct: 398 LVEEGR--WED--------------EIWNRRRNGEVYPEWLSIS-----AIPGPTGRTEY 436

Query: 418 VEGMAHDITAHKLAEMDLTRRIVTDPLTGLFNRAHMEDMLPRMLTRAAEDGRTLGLLFID 477
              + HDIT  K  E  +  +   D LTGL NRA + D L   +  A  + R + +L +D
Sbjct: 437 YVAVFHDITELKAKESQIQHQAHHDALTGLPNRALLRDRLGMAINGARREDRKVAVLSVD 496

Query: 478 LDGFKAVNDTYGHAVGDTLLQQVAGRLRRRLRHTDIAIRLGGDEFAVLLWDVAGKEAVER 537
           LD FK VND+ GH VGD  LQQ A ++R+ +R  D   R+GGDEF V+L DV G+    +
Sbjct: 497 LDNFKQVNDSLGHMVGDIYLQQAAEQMRQMVRPQDTLARVGGDEFVVVLQDVEGERDAAQ 556

Query: 538 IGAGILSIMAPAFTCTDIPCSVSASIGASLYPQHADDAPSLLRLADEAMYRAKAEGKNRM 597
           +   +L+         +    V AS+G +L+P   DD  +L+R AD AM RAK +GK R 
Sbjct: 557 VAERLLARFTDPVRVQEHELFVGASVGIALFPDDGDDPDTLVRNADIAMSRAKEQGKRRY 616

Query: 598 AFAGPS 603
               P+
Sbjct: 617 HLFTPA 622



 Score = 42.4 bits (98), Expect = 9e-08
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 11/169 (6%)

Query: 163 LQNVVDALPCPLFFKDMNGAYTLFNHAFSDMLGLTPENLQGKNADDIAPPDLAAVYHSMD 222
           L+ ++D     LF +D  G Y   NH ++D+ G+  +++ G +  DI P  +A+     D
Sbjct: 51  LRALLDNPLVALFLRDGEGRYLAANHLYADLAGVPGKDVVGLSPRDIFPHAVASALLDED 110

Query: 223 QALLDAKGPASQRYESAFTTPHGLRHVLFDKATVVDDEGTARGLVGIITDITGRKQAE-- 280
           + + +   P     E         R     K  +  +      ++G+  D+T   +AE  
Sbjct: 111 RRVAEDSTPL--LCERMLPADEAERVFRVAKLPLPPEVAGPGAVLGLAFDVTALVEAEIE 168

Query: 281 -------DALRRVEARIRALVHNASDGFFSVTPEGYITESNPAMCKLLG 322
                   AL    AR RAL   A D  +     G I + N A  ++ G
Sbjct: 169 EEVRQRTAALAESTARFRALFELAPDAVYVRGEGGRIVDCNRAAERMSG 217