Pairwise Alignments
Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710
Subject, 730 a.a., diguanylate cyclase with PAS/PAC sensor (RefSeq) from Desulfovibrio vulgaris Miyazaki F
Score = 147 bits (370), Expect = 2e-39
Identities = 149/491 (30%), Positives = 222/491 (45%), Gaps = 79/491 (16%)
Query: 146 VTELDHRKEGLRDAHRFLQNVVDALPCPLFFKDMNGAYTLFNHAFSDMLGLTPENLQGKN 205
V ++ R+ D R L N+ L C ++G + N A+ ++LG + E L +
Sbjct: 281 VCDVSVRRRAEEDRRR-LFNLSPDLMC---VGGVDGYFRELNPAWQEVLGWSREELLDRP 336
Query: 206 -ADDIAPPDLAAVYHSMDQALLDAKGPASQRYESAFTTPHGLRHVLFDKATVVDDEGTAR 264
A + P D A+ MD L +G + E+ + G + + V ++G
Sbjct: 337 WAALVHPDDRASTMQDMDT--LRERGVITN-VENRYQCRDGTWRWISWNSAFVPEQGL-- 391
Query: 265 GLVGIITDITGRKQAEDALRRVEARIRALVHNASDGFFSVTPEGYITESNPAMCKLLGLK 324
+ G+ D+T ++ + LR EAR+RA+ + T G + L+
Sbjct: 392 -IYGVGRDVTALRRMVEELRTSEARLRAM---------AATVPGVV------------LQ 429
Query: 325 VAPSSGERGELTCVAPDDDESSDANRAQNILNLPD-----------MFAEGREAWDAALH 373
G+R + T V+P R++ IL +P + R W+ +L
Sbjct: 430 WREVPGDR-QFTYVSP---------RSREILGVPPEWLLQDWRALPVHPADRTVWELSLR 479
Query: 374 RLGTGAPPAPFEVRVRRDDGQTVWLSLALWPVDSVPEEDGPPPAVE----------GMAH 423
FE R+ G+ W W ++ P G A E G+
Sbjct: 480 DAMERRGDWMFEGRLVLPGGEVRW-----WRGEARPVHGGQSGAAELPEESGIVYCGIIT 534
Query: 424 DITAHKLAEMDLTRRIVTDPLTGLFNRAHMEDMLPRMLTRAAEDGRTLGLLFIDLDGFKA 483
D T H+ A+ L + TD LTGL NR + L + R G L L+ ID+D FK
Sbjct: 535 DTTEHREAQERLRQLATTDGLTGLANRRRFLEALEHEVQRHRRYGTPLALISIDVDRFKR 594
Query: 484 VNDTYGHAVGDTLLQQVAGRLRRRLRHTDIAIRLGGDEFAVLLWDVAGKEAV---ERIGA 540
VNDT+GHAVGD +L+ +AG R +R D R+GG+EFAVLL D A +EA+ ER+ A
Sbjct: 595 VNDTWGHAVGDEVLRALAGICRAEVRDVDTVGRIGGEEFAVLLPDTAPEEAMAVAERLRA 654
Query: 541 GILSIMAPAFTCTDIPCSVSASIGASLYPQHADDAPSLLRLADEAMYRAKAEGKNRMA-- 598
G+ + AP T T P +V+ S+G S P D A +LLR AD A+YRAKA G+NR+
Sbjct: 655 GVEA--APLLT-TAGPLTVTLSLGVSASPP-CDGADTLLREADRALYRAKAGGRNRVERA 710
Query: 599 --FAGPSRAGD 607
AG GD
Sbjct: 711 FDLAGACATGD 721
Score = 36.2 bits (82), Expect = 5e-06
Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 24/179 (13%)
Query: 266 LVGIITDITGRKQAEDALRRVEARIRALVHNASDGFFSVTPEGYITESNPAMCKLLGL-K 324
L II DIT R +AE+ALRR E + ++ A G FS + ++LGL +
Sbjct: 147 LYTIIHDITDRVRAEEALRRSEQHLEMVMDGAGIGSFSWHALTDEVACDTRWGEVLGLGR 206
Query: 325 VAPSSGERGELTCVAPDDDESSDANRAQNILNLPDMFAEGREAWDAALHRLGTGAPPAPF 384
V + V PD+ LP + R L P
Sbjct: 207 VECAPMMESWRNMVHPDE--------------LPGLERARR-------RHLSGFTPRYEA 245
Query: 385 EVRVRRDDGQTVWLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTRRIVTDP 443
E RV+ DG W+ V+ + DG P V G+ D++ + AE D R P
Sbjct: 246 EYRVQGADGAWRWIQETGQVVER--DGDGLPLRVAGIVCDVSVRRRAEEDRRRLFNLSP 302
Score = 32.7 bits (73), Expect = 6e-05
Identities = 74/336 (22%), Positives = 133/336 (39%), Gaps = 37/336 (11%)
Query: 31 ASPDTQPDTPPVLFDDLPVGVFRS------TLDGEH--LLYANTSLAHLFGWPDAGAMIE 82
A+P P PP L +FR +D E ++ N + + +G+PD GA+
Sbjct: 31 AAPACDPPAPPSFGVSLYEQLFRYHSAVMLLVDAETGCIIEGNPAASTFYGYPD-GALC- 88
Query: 83 GQTPRDLY-ASPTARDDILQRLQQAGEMTTDVIHLQRPGHAQRACILHLRIDNAMKTIEG 141
G + D+ P + L L++ H G + + + + +T+
Sbjct: 89 GMSINDIANLGPEEQARRLAELREGRLTCFTSRHRLASGEVRDVEVHSVPVRLFERTLLY 148
Query: 142 WVM-DVTELDHRKEGLRDAHRFLQNVVDALPCPLFFKDMNGAYTLFNHAFSDMLGL---- 196
++ D+T+ +E LR + + L+ V+D F + + ++LGL
Sbjct: 149 TIIHDITDRVRAEEALRRSEQHLEMVMDGAGIGSFSWHALTDEVACDTRWGEVLGLGRVE 208
Query: 197 -TPENLQGKNADDIAPPDLAAVYHSMDQALLDAKGPASQRYESAFTTP--HGLRHVLFDK 253
P +N + P +L + + + L + RYE+ + G + +
Sbjct: 209 CAPMMESWRNM--VHPDELPGLERARRRHL----SGFTPRYEAEYRVQGADGAWRWIQET 262
Query: 254 ATVV--DDEGTARGLVGIITDITGRKQAEDALRRVEARIRALVHNASDGFFSV-TPEGYI 310
VV D +G + GI+ D++ R++AE+ RR + N S V +GY
Sbjct: 263 GQVVERDGDGLPLRVAGIVCDVSVRRRAEEDRRR--------LFNLSPDLMCVGGVDGYF 314
Query: 311 TESNPAMCKLLGLKVAPSSGERGELTCVAPDDDESS 346
E NPA ++LG +R V PDD S+
Sbjct: 315 RELNPAWQEVLGWS-REELLDRPWAALVHPDDRAST 349