Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1076 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  155 bits (392), Expect = 8e-42
 Identities = 112/322 (34%), Positives = 147/322 (45%), Gaps = 25/322 (7%)

Query: 276 RKQAEDALRRVEARIRALVHNASDGFFSVTPEGYITESNPAMCKLLGLKVAPSSGERGEL 335
           R+  E ALRR EAR R +  +A +G F  TPEG     NPAM ++LG +      E  E 
Sbjct: 495 RRTVEQALRRAEARFRGIFEHALEGIFQSTPEGRFLSVNPAMARILGYEGVQELLEGVE- 553

Query: 336 TCVAPDDDESSDANRAQNILNLPDMFAEGREAWDAALHRLGTGAPPAPFEVRVRRDDGQT 395
              +  D   +D  R                  D  + R+        FE R RR  G  
Sbjct: 554 ---SIGDGVYADPARR-----------------DEFVARMEEHGQVNAFEFRGRRKGGDL 593

Query: 396 VWLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTRRIVTDPLTGLFNRAHMED 455
           +WLS+       VP  DG     EG   D+T    +   L  +   DPLTGL NR    D
Sbjct: 594 IWLSVN---ARRVPGADGATMYYEGFLEDVTMGHESRERLEHQAFHDPLTGLPNRVLFHD 650

Query: 456 MLPRMLTRAAEDGR-TLGLLFIDLDGFKAVNDTYGHAVGDTLLQQVAGRLRRRLRHTDIA 514
            L   L RAA     T  +L++DLD FK +ND+ GH VGD LL+ V+ +LR  +R  D  
Sbjct: 651 RLQMALKRAARRRNYTFAMLYLDLDRFKVINDSLGHDVGDALLKVVSAKLRECVRDVDTV 710

Query: 515 IRLGGDEFAVLLWDVAGKEAVERIGAGILSIMAPAFTCTDIPCSVSASIGASLYPQHADD 574
            R GGDEF VLL +   +    R+   I + +A            +ASIG  L       
Sbjct: 711 ARFGGDEFGVLLEETPTRGTAVRVARRIRAHLAEPVRIGPHEVFTTASIGIVLRTDQYST 770

Query: 575 APSLLRLADEAMYRAKAEGKNR 596
              L+R AD AMYRAK +G++R
Sbjct: 771 PEELVRDADTAMYRAKEQGQSR 792



 Score = 45.1 bits (105), Expect = 2e-08
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 43  LFDDLPVGVFRSTLDGEHLLYANTSLAHLFGWPDAGAMIEG--QTPRDLYASPTARDDIL 100
           +F+    G+F+ST +G   L  N ++A + G+     ++EG       +YA P  RD+ +
Sbjct: 512 IFEHALEGIFQSTPEGR-FLSVNPAMARILGYEGVQELLEGVESIGDGVYADPARRDEFV 570

Query: 101 QRLQQAGEMTTDVIHLQRPGHAQRACILHLR----IDNAMKTIEGWVMDVTELDHRKEGL 156
            R+++ G++       +R G       ++ R     D A    EG++ DVT     +E L
Sbjct: 571 ARMEEHGQVNAFEFRGRRKGGDLIWLSVNARRVPGADGATMYYEGFLEDVTMGHESRERL 630

Query: 157 RDAHRFLQNVVDALPCPLFFKD 178
              H+   + +  LP  + F D
Sbjct: 631 E--HQAFHDPLTGLPNRVLFHD 650



 Score = 35.4 bits (80), Expect = 1e-05
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 263 ARGLVGIITDITGR-KQAEDALRRVEARIRALVHNASDGFFSVTPEGYITESNPAMCKLL 321
           +R L G++  +    +QA   L     ++  +V   +DG     P+G +  SN A+C++ 
Sbjct: 247 SRDLAGLVEGLEDSVRQATAELGGALEQLSTIVAGMADGLLVTDPQGLVLRSNAALCEMF 306

Query: 322 GLKVAP 327
           GL   P
Sbjct: 307 GLDADP 312