Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  139 bits (351), Expect = 7e-37
 Identities = 83/204 (40%), Positives = 108/204 (52%), Gaps = 5/204 (2%)

Query: 396  VWLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTRRIVTDPLTGLFNRAHMED 455
            VWL      ++ V +  G       +  DIT  K AE DL      D LTGL NR   +D
Sbjct: 1044 VWLE-----INQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQD 1098

Query: 456  MLPRMLTRAAEDGRTLGLLFIDLDGFKAVNDTYGHAVGDTLLQQVAGRLRRRLRHTDIAI 515
             L   +++A      + LLF+DLD FK +ND+ GH +GD LL+ VA RL+  +R  D   
Sbjct: 1099 RLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVA 1158

Query: 516  RLGGDEFAVLLWDVAGKEAVERIGAGILSIMAPAFTCTDIPCSVSASIGASLYPQHADDA 575
            RLGGDEF ++L  VA  +A   I   +L      F   D   ++S SIG SLYP  A D 
Sbjct: 1159 RLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDV 1218

Query: 576  PSLLRLADEAMYRAKAEGKNRMAF 599
             SL++ AD AMY AKA G+N   F
Sbjct: 1219 DSLIKFADTAMYHAKALGRNNFQF 1242



 Score = 30.4 bits (67), Expect = 6e-04
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 256  VVDDEGTARGLVGIITDITGRKQAEDALR 284
            V+D +G     V + TDIT RK+AE+ LR
Sbjct: 1051 VIDVKGETSHFVAVFTDITERKKAEEDLR 1079