Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  142 bits (357), Expect = 1e-37
 Identities = 85/214 (39%), Positives = 112/214 (52%), Gaps = 5/214 (2%)

Query: 386  VRVRRDDGQTVWLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTRRIVTDPLT 445
            +R R      VWL      ++ V +  G       +  DIT  K AE DL      D LT
Sbjct: 1031 IRNRARKAILVWLE-----INQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLT 1085

Query: 446  GLFNRAHMEDMLPRMLTRAAEDGRTLGLLFIDLDGFKAVNDTYGHAVGDTLLQQVAGRLR 505
            GL NR   +D L   +++A      + LLF+DLD FK +ND+ GH +GD LL+ VA RL+
Sbjct: 1086 GLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQ 1145

Query: 506  RRLRHTDIAIRLGGDEFAVLLWDVAGKEAVERIGAGILSIMAPAFTCTDIPCSVSASIGA 565
              +R  D   RLGGDEF ++L  VA  +A   I   +L      F   D   ++S SIG 
Sbjct: 1146 NAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLTISTSIGI 1205

Query: 566  SLYPQHADDAPSLLRLADEAMYRAKAEGKNRMAF 599
            SLYP  A+D  SL++ AD AMY AKA G+N   F
Sbjct: 1206 SLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQF 1239



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 187  NHAFSDMLGLTPENLQGKNADDIA-PPDLAAVYHSMDQALLDAKGPASQRYESAFTTPHG 245
            N AFS + G +   +  K    +A       +++S++Q LL  K  A + +         
Sbjct: 980  NPAFSAITGYSERQISDKYLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNRARKAI 1039

Query: 246  LRHVLFDKATVVDDEGTARGLVGIITDITGRKQAEDALR 284
            L  V  +   V+D +G     V + TDIT RK+AE+ LR
Sbjct: 1040 L--VWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLR 1076