Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 878 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  152 bits (385), Expect = 4e-41
 Identities = 129/447 (28%), Positives = 205/447 (45%), Gaps = 49/447 (10%)

Query: 163 LQNVVDALPCPLFFKDMNGAYTLFNHAFSDMLGLTPENLQGKNADDIAPPDLAAVYHSMD 222
           LQ  +D+    ++ K+  G YT+ NH+      L    + GK  +D+   ++A ++ + D
Sbjct: 206 LQTFIDSFEEHIWVKNSQGVYTICNHSVEKAWELPRSEIVGKTDEDLFGKEIAEIFLNGD 265

Query: 223 QALLDAKGP--ASQRYESAFTTPHGLRHVLFDKATVVDDEGTARGLVGIITDITGRKQAE 280
           +  ++A  P   ++  +      H     L  K   +  EG   G++G+  +I+  K+ E
Sbjct: 266 RLAIEAGTPIIVAECLDGEKQNKHLWLETL--KIPAMTSEGALAGVIGMTRNISKHKEVE 323

Query: 281 DALRRVEARIRALVHNASDGFFSVTPEGYITESNPAMCKLLGLKVAPSSGERGELTCVAP 340
           + L       +    +  +G       G IT+ N A  ++ G         R EL     
Sbjct: 324 EQLTLATNVFK----HTLEGVVITDRHGNITDVNGAFYEITGYS-------REELL---- 368

Query: 341 DDDESSDANRAQNILNLPDMFAEGREA---WDAAL-HRLGTGAPPAPFEVRVRRDDGQTV 396
                      QN    P +F  GR     +DA   H L TG      E+  RR DG   
Sbjct: 369 ----------GQN----PRLFNSGRHEKAFFDAMWNHLLETGKWNG--EIWNRRKDGTIF 412

Query: 397 WLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEMDLTRRIVTDPLTGLFNRAHMEDM 456
             ++    + ++ +E G       +  DI+A K +E  L      DPLT L NR  +   
Sbjct: 413 PQNIT---ISTIYDELGDVRYFVAVFSDISAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQ 469

Query: 457 LPRMLTRAAEDGRTLGLLFIDLDGFKAVNDTYGHAVGDTLLQQVAGRLRRRLRHTDIAIR 516
           L + L  A      L  +FID+D FK +ND++GH++GD +L ++A RLR +L+  D+  R
Sbjct: 470 LKQELRHAKRLNAQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDVLSR 529

Query: 517 LGGDEFAVLLWDVAGKEAVERIGAGILSIM----APAFTCTDIPCSVSASIGASLYPQHA 572
           +GGDEF  L   ++G ++ E   A I  +      P    T     ++AS+G S+YP   
Sbjct: 530 IGGDEFVAL---ISGIQSHEDAAAAINQLRQVFEQPFVVSTGDHLRLTASMGVSIYPDDG 586

Query: 573 DDAPSLLRLADEAMYRAKAEGKNRMAF 599
            +A +LLR AD AMYRAK+EG+N  AF
Sbjct: 587 SNADTLLRNADAAMYRAKSEGRNNFAF 613