Pairwise Alignments

Query, 607 a.a., sensory box/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1077 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  133 bits (334), Expect = 4e-35
 Identities = 108/346 (31%), Positives = 155/346 (44%), Gaps = 33/346 (9%)

Query: 257 VDDEGT---ARGLVGIITDITGRKQAEDALRRVEARIRALVHNASDGFFSVTPEGYITES 313
           +D  GT   AR    +   I+ R++A  AL    +R  A+ + +++G      + +I   
Sbjct: 479 IDASGTDELARMAQAMNRMISERQKANHAL----SRAAAVFNYSAEGIMVTDADNHIELI 534

Query: 314 NPAMCKLLGLKVAPSSGERGELTCVAPDDDESSDANRAQNILNLPDMFAEGREAWDAALH 373
           NPA  ++ G  +    G                   R+ +IL+          A   ALH
Sbjct: 535 NPAFSQITGYSLEEVKG-------------------RSPSILSSNRHPHHYYTAMWEALH 575

Query: 374 RLGTGAPPAPFEVRVRRDDGQTVWLSLALWPVDSVPEEDGPPPAVEGMAHDITAHKLAEM 433
           + G        E+  +R DGQ     LA   +  V  E G      G+  DI+  K  E 
Sbjct: 576 KEGKWEG----EIWNKRKDGQVYPEYLA---ITVVRNEQGEIIQHIGLFMDISKRKQYEQ 628

Query: 434 DLTRRIVTDPLTGLFNRAHMEDMLPRMLTRAAEDGRTLGLLFIDLDGFKAVNDTYGHAVG 493
           DL  +   D LTGL NR    + L   +  A  D R L +L IDLD FK +ND  GHA G
Sbjct: 629 DLWYQANFDTLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATG 688

Query: 494 DTLLQQVAGRLRRRLRHTDIAIRLGGDEFAVLLWDVAGKEAVERIGAGILSIMAPAFTCT 553
           D LLQ VA RL       D   R+GGDEF ++L  V  + A+E + + I+  +A  F   
Sbjct: 689 DLLLQDVAKRLENIAGKNDFVARIGGDEFVLILPRVTNEFAIEHMASRIIETLATPFNLN 748

Query: 554 DIPCSVSASIGASLYPQHADDAPSLLRLADEAMYRAKAEGKNRMAF 599
           +    +SAS G  +YP+   D  SL R  + AMY+AK  G+N   +
Sbjct: 749 EREIQISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKY 794