Pairwise Alignments

Query, 538 a.a., flagellar M-ring protein FliF (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 565 a.a., flagellar MS-ring protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  178 bits (451), Expect = 6e-49
 Identities = 139/540 (25%), Positives = 252/540 (46%), Gaps = 36/540 (6%)

Query: 21  MSQRVFIVGLALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKVPYKLEN 80
           + Q   I+ LA+      F + +W   P+YR L      ++  +V+ +L  NK+PY+++ 
Sbjct: 34  LRQVTMILALAICLALAVFVM-MWAQEPEYRPL-GKFEAQEMIQVLDVLDKNKIPYQVDF 91

Query: 81  DGGTVLVPADKLYDLRIKVAGEGNLVGQGIGFEIFD-DLKVGQTDFVQKINYQRALQGEL 139
           D   + VP DK  D+R+ ++  G         +    D+  G +  +++   + + +  L
Sbjct: 92  D--VLRVPEDKYQDIRLLLSRNGVDAASTTNQDFLSQDMGFGVSQRLEQARLKHSQEQNL 149

Query: 140 IRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQAIVNLVVM 199
            RTI E   V  A+V L +P  ++F   Q K SA+VVV  R G  +  ++V AIV++V  
Sbjct: 150 ARTIEELKSVSRAKVILALPKENVFARNQSKASATVVVTSRRGG-LGQEEVDAIVDIVAS 208

Query: 200 AVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEELLYPVIG 259
           AV+G++  RV+V D++G++L   ++D +       +LE   + +     +++ +L P++G
Sbjct: 209 AVQGLEPTRVTVTDSNGRLLNSGSQDGA-SARARRELELVKQKEAEYRAKVDAILMPILG 267

Query: 260 PGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRANLEAGAPDANFRGDG 319
           P    ++V+  +DF+      + ++P+   VRSE   E  T G AN+  G P A      
Sbjct: 268 PENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRSEMTLETQTSGEANM--GIPGALSNQPP 325

Query: 320 ISGS-----------ASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVD-GTY 367
           +  +           A     +    T N+E++    +    +G + R+SV+V VD  T 
Sbjct: 326 MESNIPQTLQEAQDKAQANGNSHREATRNYELDTTISHTRQQIGVVRRVSVSVAVDYKTG 385

Query: 368 EKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQL 427
           E   +G    V R   E+  IR+L+  AVG+   RGD++EV ++ F    + +   LP  
Sbjct: 386 EANTEGQVNRVARTEAELANIRRLLEGAVGFSGQRGDSIEVVTVPFMDQLVEEVPELPMW 445

Query: 428 FLDYALRLGKPLLNALLVFLFLLLVVRPVV-MALIRPKVE-------GEMIEGLEGLPAG 479
              +  +  K    +L + + +L VVRP++   L+  KV+       G  +  +E   A 
Sbjct: 446 EQPWFWKAMKLASGSLAILVLILFVVRPLLKKLLLTDKVDMPDDGRLGHELAEIEDQFAA 505

Query: 480 EERLALIEGDEEVDALD-------ALRKIEDIKAHAMQLAEQNMDQAVGIIRSWLKNDEG 532
           +    L   D E    D        L K +D+      L     + +  ++++WL+ D G
Sbjct: 506 DTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVVKNWLQQDNG 565