Pairwise Alignments

Query, 306 a.a., transcriptional regulator, LysR family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 300 a.a., putative DNA-binding transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score = 89.0 bits (219), Expect = 1e-22
 Identities = 85/312 (27%), Positives = 136/312 (43%), Gaps = 39/312 (12%)

Query: 4   SWEQVEAFVRAARLGSFSAAARELGKAQSAVSTAIANLEADLGVNLFDRAGHLPVLTPEG 63
           S + ++     AR+GSF+AAA +L K  SAVS A+  +E DLGV LF+R      LTP G
Sbjct: 3   SEQSMQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQVEEDLGVVLFERHHRSVSLTPAG 62

Query: 64  EALLGDAERLLARGERFGSRAATLATGVEPRLVLAVDELAWGPALVDRLTGFAERWPDVE 123
           E  +     +L            +A G +P L +A+D +     + + +  F   + +VE
Sbjct: 63  EHFVKQVRSMLTHLASLKEDTKRVANGWQPTLSIALDNIVRADKISNLIADFYRHFDNVE 122

Query: 124 MEFLFGIVGDIALMVAEGRAHMGIMVPLADPRGRRVYAEEAWRDAESRLAGLDYFPAGAV 183
           +     +   +   +A GR+ + I    A P G     +  ++D             G +
Sbjct: 123 LIIRIEVFNGVWEAIATGRSDIAIGATTAIPVG----GDYRFKD------------MGDI 166

Query: 184 PALPVVAAGHPLAG-RRAVSPDELEALRQLDITSRGGERPDALSGQVWRVDSYWAL--RD 240
               +V+  HPLA   R +  DEL +   + +     E P  ++   W +D+   L   D
Sbjct: 167 EWTFLVSKHHPLAAIDRPLLDDELRSYPSICLEDTSREIPKRMT---WLLDNQRRLVVPD 223

Query: 241 LVRA------GLGWAYLPESLAASDLDAGRLVRLDL----APAGEVWRWPLYLVRDARRA 290
            +RA      GLG  Y+P+  A   + AG L+  +L    AP+     W      DA  +
Sbjct: 224 WIRAINCFREGLGIGYMPKHFATPFVQAGALIEKELERPKAPSPCCLAW-----NDANMS 278

Query: 291 PGPAARWLLEAL 302
             PA  W+L+ L
Sbjct: 279 --PAMAWVLDYL 288