Pairwise Alignments

Query, 657 a.a., sensory box histidine kinase/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1081 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  102 bits (254), Expect = 9e-26
 Identities = 107/429 (24%), Positives = 179/429 (41%), Gaps = 54/429 (12%)

Query: 255 VIVHTAPILDNDGEIEMVLEISVDVSKVRRLQDELRITRERYRQLFDEAPCYIAVIDRSL 314
           +I +  P+ +  GEI+  + +  D++K ++ +D LR + +  R + D A      +D   
Sbjct: 504 LIANGRPLRNETGEIQGAVMVYHDITKTKKAEDALRRSEQMSRAIIDTALDAFVQLDAQG 563

Query: 315 KVVD------------ANRRFHHDFGEPAA------------RHCHDIFAHRLAACQG-- 348
           ++ D                   DFGE A             R   +   H ++  QG  
Sbjct: 564 RITDWSPHAESMLGWSREEAIGQDFGELALPPDQTREIKTGYRRFIEAIEHDMSVIQGHR 623

Query: 349 CPVERSFDDGKPHQYETVVTT--GDGRQANVLVWTSPLRDAAGNITEVMEMSTDITQVRQ 406
             +E    DG P   E  +T    +GR     V    +RD    +TE +       Q+RQ
Sbjct: 624 IEIEAVRRDGSPIALEVSMTALPVEGR----FVVNVFMRD----LTEKIAFEE---QLRQ 672

Query: 407 LQDRLSQLGLLLGSTAHGIKGLLTALDGGVYRLGSGLDRNDEARVRDSFEDIRHLTGRLR 466
            Q ++  +G L G  AH    +LT + G +  +  G+   D+  +    + I     R  
Sbjct: 673 SQ-KMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVA--DQPHLAAIAKLISEAADRGA 729

Query: 467 KMVLDILYYAKKRDLNWEVVVAERFATETAELIEGKAVNRGVGFQLEIAAESGTFEADAG 526
           ++   +L +A+K+ L  +        +    L+    +   +  +  +A ++ +   D G
Sbjct: 730 ELTRLLLAFARKQPLRPDETEVNALLSGLQSLLR-PTLGEPIEVETVLAPDTWSIYVDRG 788

Query: 527 ALSAALVNLLENAVEAC------AAERSR----PEHSVTFSVGGDANHVEFSVRDDGVGM 576
            L +ALVNL  NA +A         E S     P+    F      ++V  ++ D G G+
Sbjct: 789 QLESALVNLAVNARDAMPKGGKLTIETSNVVVDPDLGKRFGDLAPGDYVMIAITDSGCGI 848

Query: 577 DRETREKLFTLFFSSKG-SAGTGIGLFVANQVVQQHGGHIAVASEPGHGTTFTVSLPRRL 635
               R K+F  FF++K    GTG+GL +    ++Q GGHI + SE G GTTF + LPR  
Sbjct: 849 PETIRSKVFDPFFTTKEVGKGTGLGLSMVYGFIKQSGGHITLDSEEGQGTTFRLYLPRAQ 908

Query: 636 PDVARCPAP 644
             V    AP
Sbjct: 909 IQVDAEAAP 917



 Score = 39.3 bits (90), Expect = 1e-06
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 2    SESILLVDDEEGIRKVLGITLADAGYRVTTAADGEEAMRRFAEERP-DIVLTDIKMPG-M 59
            +E+IL+V+D+  +R  +   L   GY   +  +   A+     +   D++ TD+ MPG M
Sbjct: 927  TETILVVEDDAMVRSYVNAQLKSLGYTTLSVGNAAAALSIGESDTAFDLLFTDVVMPGPM 986

Query: 60   SGLELLESIKSRDSEVEVIMLTGHGDMEL 88
            +G++L   +  R   + V+  +G+ +  L
Sbjct: 987  NGVQLAAEMIKRRPGLRVLYTSGYSENAL 1015