Pairwise Alignments

Query, 325 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  405 bits (1041), Expect = e-118
 Identities = 187/324 (57%), Positives = 262/324 (80%), Gaps = 1/324 (0%)

Query: 1   MFAFIIRRVAQALLVMFIISLLGFAIKYSFGDPTREMMGVSVSVKEREALREELGLNDPF 60
           MF+F+++R+ QAL+VMF+ISL+ FAI+ + GDP RE++G SVS  ER+ALR+ELGLNDPF
Sbjct: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF 60

Query: 61  AVQWTRFASGALKGDLGISYFYRKPALDVILDKAPATLELVFVAACLIILISVPVGVYAA 120
            ++++RF + A++GDLG SYF+++PAL+VI DK  ATLELVF A  +II+ S+P+GVY+A
Sbjct: 61  IIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSA 120

Query: 121 CRPKDVLSRLFMGVSTIGVSVPVFLTAIFLIYIFSVNLGWLPSFGRGNPEHVIGSWDTNL 180
             PK + +++ M  S+IG+S+PVFLTAI L+Y+FS+ LGWLPS+GRG   +++G W++  
Sbjct: 121 IHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLG-WESGF 179

Query: 181 TTWANFKHIILPGISLSSIMLPLFIRLIRAEMKEVLETEYVKFARAKGLKTWRVIMVHAF 240
            T    +H++LP I+L+SIMLPLFIRL+R+EM EVL +EY+KFA+AKGL   ++   HA 
Sbjct: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239

Query: 241 KNTLLPVITVGGVQLGTMIAFTILTETVFQWQGMGFMFIDAVERADTSLLVAYLIFCGAI 300
           KNT+LPV+TVGGVQ+GTM+A+TILTETVFQW G GF+F++A+ R DT L+ AY+IF G I
Sbjct: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299

Query: 301 FVTVNTVVDIVYGLVNPMVRIAGR 324
           FV  NT+VD++YGL+NP V + G+
Sbjct: 300 FVVTNTIVDLLYGLINPTVNLTGK 323