Pairwise Alignments

Query, 306 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 290 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  192 bits (489), Expect = 6e-54
 Identities = 114/293 (38%), Positives = 173/293 (59%), Gaps = 20/293 (6%)

Query: 10  KSYFLYSFLRDPVAVGSFALLFILAVSAILAPLIAPHSPYDGATLDIMNAELPPAWKPEG 69
           +S FL  FL +  AV   A+L +  ++A+LAP IAPH P     L +  A     W    
Sbjct: 17  RSPFLKKFLANKGAVLGAAVLLLFVLAAVLAPWIAPHDPLKANFLAVRKAPSLIYW---- 72

Query: 70  TADFLLGTDNQGRDILSAMLYGMRVSLVIGLGAVALQSVIGIFVGLVSGYGSKRIDSILM 129
                +GTD  GRD+ S +LYG R SL+ G  +VA+   IG+ +GL++GY   ++D I+ 
Sbjct: 73  -----MGTDELGRDLFSRLLYGARSSLLAGGVSVAIAMFIGVPLGLLAGYFGGKLDMIIS 127

Query: 130 RVADVQLSFSSYMVAIFFGAILQMVVGVGRYEEVAVPFLIFVIGLSEWPQIARTVRASVL 189
           +V +  LS    ++AI  GA L            ++   +  IGLS  P  AR  R  VL
Sbjct: 128 QVMEALLSCPFLVLAIALGAFLGP----------SLTNAMIAIGLSAMPIFARLTRGQVL 177

Query: 190 AEKKKEYVEAARVIGLPARRIMLRHILPNTLTPVLVISTVQVANAVMSEAALSFLGLGMP 249
           + K ++Y+E AR IGLP R I+LR++LPN ++P++V +T+ +A+A+++EA+LSFLGLG  
Sbjct: 178 SIKHEDYLEGARAIGLPDRWIILRYVLPNVMSPLVVQATLTIASAILAEASLSFLGLGQQ 237

Query: 250 VTQPSLGSLIKSGFQYFFSGSWWITLFPGIMLILLVLSINLLGDWLRDFLNPK 302
              PS GS++ +  + F   + W+++ PG+ + + VL  NLLGD LRD L+PK
Sbjct: 238 PPSPSWGSMLNTA-KNFMEQAPWMSIAPGVAIYITVLCFNLLGDGLRDALDPK 289