Pairwise Alignments

Query, 306 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 284 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  189 bits (480), Expect = 6e-53
 Identities = 109/296 (36%), Positives = 175/296 (59%), Gaps = 20/296 (6%)

Query: 8   FRKSYFLYSFLRDPVAVGSFALLFILAVSAILAPLIAPHSPYDGATLDIMNAELPPAWKP 67
           F    +L  + R P+     +L+  ++ +A+LAP IAPH P     L++     PP+   
Sbjct: 7   FSPRRWLLFWTRHPMLATGLSLVLAMSAAALLAPWIAPHDP---TALNLTAILQPPS--- 60

Query: 68  EGTADFLLGTDNQGRDILSAMLYGMRVSLVIGLGAVALQSVIGIFVGLVSGYGSKRIDSI 127
              +   LGTD  GRD+LS ML+G RVSL +G  +V +   IG+ +GL +GY     D +
Sbjct: 61  ---SAHPLGTDALGRDVLSRMLHGARVSLWVGFVSVGISVAIGLALGLAAGYFGGLADEL 117

Query: 128 LMRVADVQLSFSSYMVAIFFGAILQMVVGVGRYEEVAVPFLIFVIGLSEWPQIARTVRAS 187
           +MR  D+ L F S+           +++ V  + E ++  ++ VIGL+ W  +AR VRA 
Sbjct: 118 IMRCVDIMLCFPSFF----------LILAVIAFLEPSLLNIMAVIGLTSWMGVARLVRAE 167

Query: 188 VLAEKKKEYVEAARVIGLPARRIMLRHILPNTLTPVLVISTVQVANAVMSEAALSFLGLG 247
            L+ ++++++ AAR+ G    RI+  H+LPN + PVLV +T+ VA A+++E+ALSFLGLG
Sbjct: 168 TLSLRERDFIAAARLAGAGPVRILCLHVLPNAVAPVLVSATLGVAGAILTESALSFLGLG 227

Query: 248 MPVTQPSLGSLIKSGFQYFFSGSWWITLFPGIMLILLVLSINLLGDWLRDFLNPKL 303
           +    PS G+++  G +     + W+++FPG  ++L VL  NLLG+ LRD L+P+L
Sbjct: 228 VQPPMPSWGNMLLEG-KDVLEIAPWLSVFPGCAILLTVLGYNLLGESLRDLLDPRL 282