Pairwise Alignments

Query, 306 a.a., oligopeptide/dipeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 322 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  300 bits (767), Expect = 4e-86
 Identities = 150/295 (50%), Positives = 211/295 (71%), Gaps = 1/295 (0%)

Query: 10  KSYFLYSFLRDPVAVGSFALLFILAVSAILAPLIAPHSPYDGATLDIMNAELPPAWKPEG 69
           +S F + F R PVA+ SF+++ +L ++A+ APLIAP+ P++ A+L++MN    P      
Sbjct: 27  QSDFAWKFRRSPVALVSFSVVVLLVLAALFAPLIAPYDPFNPASLNLMNGFSAPMTPNAF 86

Query: 70  TAD-FLLGTDNQGRDILSAMLYGMRVSLVIGLGAVALQSVIGIFVGLVSGYGSKRIDSIL 128
           T D F LGTD+QGRD+ S +LYGMR+SL +G  AV     +G+ +GL++GY    +++I+
Sbjct: 87  TGDTFWLGTDDQGRDVFSTILYGMRISLFVGFAAVLFAMTLGVTLGLIAGYVGGWVETII 146

Query: 129 MRVADVQLSFSSYMVAIFFGAILQMVVGVGRYEEVAVPFLIFVIGLSEWPQIARTVRASV 188
           MRVADVQL+F + +VA+    I + +  V   +++A+  LI  IGLS+W Q AR VR + 
Sbjct: 147 MRVADVQLTFPAILVAMLIFGIAKGITPVEYRDQMAIWVLILAIGLSDWVQFARVVRGAT 206

Query: 189 LAEKKKEYVEAARVIGLPARRIMLRHILPNTLTPVLVISTVQVANAVMSEAALSFLGLGM 248
           L EK KEYV+AAR+IG  +  IMLRHILPN L+PVLVI+T+ +A A+++EA LSFLG+G 
Sbjct: 207 LVEKNKEYVQAARLIGRGSGAIMLRHILPNVLSPVLVIATISLALAIIAEATLSFLGVGA 266

Query: 249 PVTQPSLGSLIKSGFQYFFSGSWWITLFPGIMLILLVLSINLLGDWLRDFLNPKL 303
           P TQPSLG+LI+ G  + FSG WWI  FP + L++L LS+NLLGDWLRD LNP+L
Sbjct: 267 PPTQPSLGTLIRIGQGFLFSGEWWILFFPAVTLLVLALSVNLLGDWLRDALNPRL 321