Pairwise Alignments

Query, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 421 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  217 bits (553), Expect = 4e-61
 Identities = 136/332 (40%), Positives = 182/332 (54%)

Query: 2   HIDMDAFFASVEQLDDPSLRGRPVIVGGSSERGVVSAASYEARRYGVRSAMPTVTARRLC 61
           HID DAF+ASVE+ D+PSLR RP+IVG    RGV + A Y ARR+G RSAMP      LC
Sbjct: 40  HIDCDAFYASVEKRDNPSLRDRPLIVGHPGGRGVATTACYIARRFGARSAMPMFKCLELC 99

Query: 62  PHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQRL 121
           P  V +     +Y  VS  V A++ + +  +E  S+DEAYLD +  E  F     ++   
Sbjct: 100 PEAVVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEHRFARPPAVSLAT 159

Query: 122 KGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFILPPEDVAAFLATLPVGRIPGVG 181
             R  E   G+T S+GL+  +FLAK+ASD+NKP G  ++   +  A LA +PV R+ GVG
Sbjct: 160 IARRVEREIGITVSIGLSSNRFLAKLASDMNKPQGFTVIDEAEAPALLAPMPVKRLHGVG 219

Query: 182 KRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYDRARGIDPRPLEPWTPPKSESA 241
                 L  LG+ T GD+   P +    RFGK G  L+  A G   R + P    KS SA
Sbjct: 220 AATERRLAELGLHTIGDLQGRPEADLLARFGKIGRALHAHAWGRGGRTISPDRETKSISA 279

Query: 242 EVTLAADTADRAVLRRWLLAQAERVGGSLRRQGLAGRTITLKVKYADFRQLTRSRTLPEP 301
           E T   D +    L R L   +ERV  +L R  LAG T+ LK+K  DFR LTR   L +P
Sbjct: 280 ETTFERDLSRLPDLARALGPLSERVARALTRNALAGATVVLKLKTHDFRILTRHARLGDP 339

Query: 302 VSATQTIFEEAWALLEALDLEAKVRLVGLGVS 333
            +  + I   A  LLE      + RL+G+G++
Sbjct: 340 TARAEVIAGAARRLLERETDGRRFRLIGVGMA 371