Pairwise Alignments

Query, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 384 a.a., DNA-directed DNA polymerase from Herbaspirillum seropedicae SmR1

 Score =  216 bits (550), Expect = 9e-61
 Identities = 133/356 (37%), Positives = 193/356 (54%), Gaps = 29/356 (8%)

Query: 2   HIDMDAFFASVEQLDDPSLRGRPVIVGGSSE---------------------RGVVSAAS 40
           H+DMDAF+ASVE L  P LRG+ V++GG S                      RGVV+ ++
Sbjct: 9   HLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVVTTST 68

Query: 41  YEARRYGVRSAMPTVTARRLCPHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEA 100
           YEAR  GV SAM  + A +L P  + +      Y + SR+    + + +P++E   +DE 
Sbjct: 69  YEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIEDRGIDEI 128

Query: 101 YLDATGLERLFGPVDEMAQRLKGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFIL 160
           Y+D   L        E+A+++K  V  AT  LTCS+G+AP K LAKI+S+++KP+G+ IL
Sbjct: 129 YID---LSAWSDTAPEVARQIKDAVHAATS-LTCSIGVAPNKMLAKISSELDKPNGLTIL 184

Query: 161 PPEDVAAFLATLPVGRIPGVGKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYD 220
            P D+   +  LPV +I G+G +  E L  LG+ T  D+           FG+       
Sbjct: 185 TPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLAGAAPDLLRAHFGRSYAEWLG 244

Query: 221 R-ARGIDPRPLEPWTPPKSESAEVTLAAD---TADRAVLRRWLLAQAERVGGSLRRQGLA 276
           R A+G+D RP++ ++ PKS S E T   D    ADRA L     A   ++   L R+G  
Sbjct: 245 RVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRKGYV 304

Query: 277 GRTITLKVKYADFRQLTRSRTLPEPVSATQTIFEEAWALLEALDLEAKVRLVGLGV 332
           GRTI +K+KYADFR +TR  TLP P      I + A   L+ + L+ K+RL+G+ V
Sbjct: 305 GRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRV 360