Pairwise Alignments

Query, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 385 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

 Score =  213 bits (541), Expect = 1e-59
 Identities = 131/356 (36%), Positives = 191/356 (53%), Gaps = 29/356 (8%)

Query: 2   HIDMDAFFASVEQLDDPSLRGRPVIVGGSSE---------------------RGVVSAAS 40
           H+DMDAF+ASVE L  P LRG+PV++GG                        RGVV+ ++
Sbjct: 10  HLDMDAFYASVELLRYPELRGKPVVIGGGRNATPKILADGTRRFARLRDYVGRGVVTTST 69

Query: 41  YEARRYGVRSAMPTVTARRLCPHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEA 100
           YEAR +GV SAM  + A +L P  + +      Y   SR+    +  F+  +E   +DE 
Sbjct: 70  YEARAFGVFSAMGMMKAAQLAPDAILLPTDFESYRRYSRLFKDAVGAFTDQMEDRGIDEI 129

Query: 101 YLDATGLERLFGPVDEMAQRLKGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFIL 160
           Y+D T +    G   E+  R+K  VR+AT  LTCS+ +AP K LAKI S+++KPDG+ +L
Sbjct: 130 YIDLTAVT---GESRELGDRIKAAVRQATS-LTCSIAIAPNKLLAKIGSELDKPDGLTVL 185

Query: 161 PPEDVAAFLATLPVGRIPGVGKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYD 220
              D+ + +  L   +I G+G R  E L  +G+ T G++        +  FG+     + 
Sbjct: 186 TMADLESRIWPLAAKKINGIGPRATERLAGIGIATVGELAAADPGLLQEHFGRTYAEWFA 245

Query: 221 R-ARGIDPRPLEPWTPPKSESAEVTLAAD---TADRAVLRRWLLAQAERVGGSLRRQGLA 276
           R ARGID RP+   + PKS S E T   D     DR  L   L    ERV   L+R+G  
Sbjct: 246 RVARGIDDRPIVVASEPKSMSRETTFERDMHVNRDRVTLTPALTRLCERVADDLQRKGYG 305

Query: 277 GRTITLKVKYADFRQLTRSRTLPEPVSATQTIFEEAWALLEALDLEAKVRLVGLGV 332
           GRT+ LK+K+ADFR +TR  +LPE V+    I   A   L+ + L+ ++RL+G+ +
Sbjct: 306 GRTVGLKIKFADFRIVTRDLSLPEAVTDAAAIRRAAGECLKRVPLDRRIRLIGVRI 361