Pairwise Alignments

Query, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

 Score =  222 bits (565), Expect = 1e-62
 Identities = 134/336 (39%), Positives = 193/336 (57%), Gaps = 9/336 (2%)

Query: 1   MHIDMDAFFASVEQLDDPSLRGRPVIVGGSS-ERGVVSAASYEARRYGVRSAMPTVTARR 59
           +HIDMD +FA+VE  D P  RG+P+ VGGS  +RGV+S  +YEAR++GVRSAM T  A +
Sbjct: 5   IHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATGYALK 64

Query: 60  LCPHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQ 119
           LCP  + V GR   Y EVS+ + A+   ++ ++E  S+DEAYLD +  +   G    +A+
Sbjct: 65  LCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDCKLFKGSATLIAE 124

Query: 120 RLKGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFILPPEDVAAFLATLPVGRIPG 179
            ++  +   TG LT S G+AP+KFLAK+ASD+NKP+G  ++PP++VA F+ +L + +IPG
Sbjct: 125 AIRRDILAETG-LTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRKIPG 183

Query: 180 VGKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYDRARGIDPRPLEPWTPPKSE 239
           VGK   E L  LG+ T  DV  +P      RFGK G VL +RA GID R +      KS 
Sbjct: 184 VGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRERKSV 243

Query: 240 SAEVTLAADTADRAVLRRWLLAQAERVGGSLRRQGLAGRTI---TLKVKYADFRQLTRSR 296
             E TLA D       ++ +    + +   L R    GR I    +K+K+ DF+Q T   
Sbjct: 244 GVETTLAQDIYTLEQCQQVMPGLIQELSSRLGRSA-KGRQIHKQVVKLKFNDFKQTTIEH 302

Query: 297 TLPEPVSATQTIFEEAWALLEALDLEAKVRLVGLGV 332
              E    +  +F E  +   A      +RL+G+ V
Sbjct: 303 RSDE---VSVVMFYELLSQAMARQEGRGIRLLGVSV 335