Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1026 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  397 bits (1019), Expect = e-114
 Identities = 275/898 (30%), Positives = 440/898 (48%), Gaps = 38/898 (4%)

Query: 337  AVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLDPQQ 396
            A+    + +  L+ Y ++++  L+R+ SVGKV   G++ E I+I+ S  +LA+LG+  + 
Sbjct: 146  ALTGSGFDYAILKDYADRIQLQLQRVKSVGKVELIGLQDEKIWIELSNVKLATLGVPLEA 205

Query: 397  VAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDVADV 456
            V Q L A+N     G +ET    V L   G   +   + +  +  +  G    + DVA+V
Sbjct: 206  VRQALEAQNAVTAAGFVETISDRVQLRVTGSFETVKQIRDFPIRVA--GRTFRIGDVAEV 263

Query: 457  TRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALGDLTQRLP 516
             R +  P      F+   A G         LAV M+SG  I    + ++     L Q LP
Sbjct: 264  HRGFNDPPAPRMRFMGEPALG---------LAVSMKSGGDILVLGQALEQEFARLQQELP 314

Query: 517  EDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLTLAM 576
              + + + SDQP  V   V  F   L EA+V+V+ V+F      R+ L++ALSIPL LAM
Sbjct: 315  AGMQLRKVSDQPAAVKTGVGEFVKVLIEALVIVLLVSFFSLGV-RTGLVVALSIPLVLAM 373

Query: 577  TFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPTKLA 636
            TF  M  L I L +IS+ +L+LALGL+VDD ++A + +  ++ +G  R  AA    T  A
Sbjct: 374  TFAAMSYLDIGLHKISLGALVLALGLMVDDAIIAVEMMAIKMEQGYDRLKAASFAWTSTA 433

Query: 637  RAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVLLD- 695
              +L  T+     +LP        G +  S+  VVA SL+AS I ++ F+PL+G  LL  
Sbjct: 434  FPMLTGTLITAAGFLPIATANSSTGEYTRSIFQVVAISLIASWIAAVMFVPLIGEKLLPD 493

Query: 696  ----AGRREGTVEERRARGLGRLYYAVGG---WAIDHRWKVLAGSLLLVVAGFWLQGQLK 748
                   + GT  E         Y  V     + +  R  V+  +L +  A   L   + 
Sbjct: 494  LAKKTAHKHGTSSEGHDPYATPFYQRVRRLVTFCVRRRKTVILLTLAIFAAAVVLFRLVP 553

Query: 749  PQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLPPAL 808
             QFFP        VDL L E A+++AT         ++ +R                  +
Sbjct: 554  QQFFPASGRLELMVDLKLAEGASLKATEAEVRRLEELLKERAG----------------I 597

Query: 809  RSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERLPSARA 868
             +   + G G PRF+  +  +L   ++AQ +V        + L   L + + E  PS R 
Sbjct: 598  DNYVAYVGTGSPRFYLPLDQQLPATSFAQFVVLADSIESREALRSWLIERMREDFPSLRG 657

Query: 869  DVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARL 928
             V  LENGPP+G PVQ R+ G+ I  +R  + ++ A +  +P    V  +W   + + RL
Sbjct: 658  RVTRLENGPPVGYPVQFRVTGEHIDVVRGLARQVAAKVNENPHVANVHLDWQEPSKMVRL 717

Query: 929  RVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGL 988
             VD D+A   GVT  +++       TG++V+  RE    + ++ R    ER + + +  L
Sbjct: 718  NVDQDRARALGVTTAELSGFLRRTFTGSSVSQFREDNELIEILLRGTERERLELSMLPSL 777

Query: 989  YVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIG 1048
             +  + G  VPL+Q+A  EYG E   I+ RN+   V +         P+ +V    P + 
Sbjct: 778  AIPTESGRSVPLSQVATLEYGFEEGVIWHRNRLPTVTVRADVYGEQQPAALVREIEPTLA 837

Query: 1049 RFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAI 1108
              R  LP G+ LE GG  E+  +G + +   M + + ++   L+ Q ++  +  +VF   
Sbjct: 838  EIRDQLPGGYLLEVGGTVEDSERGQRSVNAGMPLFVIVVLTLLMAQLKSFSRSAMVFLTA 897

Query: 1109 PYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLD 1168
            P G+ G    L L GQPFGF+A LG  +L G+I+ + ++L D IE+    G+   +A+++
Sbjct: 898  PLGIIGVALFLLLFGQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIGAGQARFSAIVE 957

Query: 1169 AGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYA 1226
            A + R RP+++T  A+V+A+ PL+      + P+  A  GGL VAT +TLL +P LYA
Sbjct: 958  ATVRRFRPIVLTALASVLAMIPLS--RSIFFGPMAVAIMGGLIVATALTLLFLPALYA 1013



 Score = 53.9 bits (128), Expect = 7e-11
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N + + ++ R I   L++   + G  ++  + Q +DP    +A  +   WPGA AE +  
Sbjct: 4   NLSAWALQNRQIVVYLMLLLAIVGALSYSKLGQSEDPPFTFKAMVIQTQWPGATAEEMSR 63

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFRL-QEVGQL- 133
           ++T R+E+ +      E+I S SR G S VT    + +   D  + D+ +++ +++G + 
Sbjct: 64  QVTERIEKKLMETGEYERIVSFSRPGESNVTFMARDSMRSKD--IPDLWYQIRKKIGDIQ 121

Query: 134 ---PDGAGPLTYIKDFGDT 149
              P G     +  +FG T
Sbjct: 122 HTFPPGVRGPFFNDEFGTT 140