Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1049 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  433 bits (1113), Expect = e-125
 Identities = 291/955 (30%), Positives = 477/955 (49%), Gaps = 35/955 (3%)

Query: 277  RLHTEPGLVVLDVSTRHDAAALSARLAVFRA-ERVG--ANALHPDLWEPAVFASGDDARA 333
            R +T  G  ++ V    D  A     A ++  ++VG  AN L   +  P       D   
Sbjct: 91   RSYTRAGSAIITVQIEGDTNADEVADAFYQVRKKVGDIANELPEGVLGPYFNDEFGDTFI 150

Query: 334  ALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLD 393
             L +++ D +S+ +L+ +  + R  L     V KV   G +PE I+ID S + LA  GL 
Sbjct: 151  TLHSISGDGFSYPELKRFAIEGRDMLLATPGVEKVVVLGDQPEKIYIDLSSKVLAERGLT 210

Query: 394  PQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDV 453
               +   +A +N     G ++T  R V +  EG++    D+ E+ +   A    + L D+
Sbjct: 211  FNDLRNAIAGQNNVDYAGSVDTGTRSVRISVEGDVTKVEDIRELRLR--AGDRTIRLGDI 268

Query: 454  ADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALGDLTQ 513
            A VT     P      F   D+         + + V M  G ++    + V+A       
Sbjct: 269  ATVTSGLEDPYARKFRFNGHDS---------VQIGVVMAKGFNVTDVGKAVEATYDRFES 319

Query: 514  RLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLT 573
             LP  + V + S+QP  VTE +  F+ +L EA+++V+ V+F+    WRS L++A++IPL 
Sbjct: 320  ALPYGVSVDQVSNQPEVVTEAITEFSHALIEALIIVLIVSFLSIG-WRSGLVIAIAIPLV 378

Query: 574  LAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPT 633
            LA TF +M+ LGIDLQ+IS+ +LI+ALGLLVDD ++  + ++R++ EG  +  AA    +
Sbjct: 379  LAATFAIMYELGIDLQRISLGALIIALGLLVDDAMIVVEMMERKLEEGLEKIDAASFAYS 438

Query: 634  KLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVL 693
              A  +L  T+     ++P        G ++ S+  VV  +LV S  V++ F P LG ++
Sbjct: 439  STAFPMLTGTLITTAGFIPVGFAESTAGEYVRSLFYVVGIALVVSWFVAVYFTPWLGYMI 498

Query: 694  LDAGRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKPQFFP 753
            L      GT  +       R      GWA+ HR  VL  +L + V   W    +   FFP
Sbjct: 499  LKQRHHAGTHHDVFDTRFYRRLRTTVGWAVRHRVVVLLMTLAIFVTSLWAFQFIPKNFFP 558

Query: 754  KDRSYLSYVDLWLPEDATVEATARVA-ADAARIVTDRVAAFDAETGRAAKGLPPALRSVT 812
            +       VDLWLPE  +++   + A A   R++ D    F                 + 
Sbjct: 559  QSSRPEILVDLWLPEGTSIKEVEKQAKALEERMMDDEDKRF-----------------IA 601

Query: 813  VFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERLPSARADVME 872
             + G G PRF+  +  +LR PN+AQLLV   D    + LI  L+  L+E  PS RA V  
Sbjct: 602  TYIGEGAPRFFLPLDQQLRNPNFAQLLVMAKDEPARERLIAKLRTILAEDFPSIRAKVDR 661

Query: 873  LENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARLRVDP 932
            L  GPP G PVQ+R+ G D   +R  ++++K   + +P    + D+W       +L +D 
Sbjct: 662  LFLGPPTGWPVQMRVMGPDREEVRRIADQVKTKFQENPMLGAIHDDWLEPVPAMKLVIDQ 721

Query: 933  DKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGLYVAG 992
            D+A   G+T   + +    A +G  + + R+G  TV +++R     R   + V+ +YV  
Sbjct: 722  DRARALGITSQRIRQMLQAAMSGVPLDSFRDGEETVSIMAREPGGNRHLLSAVQSVYVPT 781

Query: 993  QGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIGRFRA 1052
              G  VP++QIA+    ME    +RR++   + +     +GV P++V  +    +   R 
Sbjct: 782  DFGGFVPVSQIAKVVPVMEQGIEWRRDRLPTITVRGTLPDGVQPNDVAMQLFDELKGLRD 841

Query: 1053 DLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAIPYGM 1112
             L PG+++E  G  E+  +    +A    I + +I + L+ Q ++  K ++V A  P G+
Sbjct: 842  GLAPGYKVEIQGGAEDSAESQASIAAKAPIMLVVIVILLMVQLQHFGKAMLVLATGPLGI 901

Query: 1113 TGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLDAGIV 1172
             GA AAL + G PFGF+A LG+ +L+G+I+ + I+L D I++    G +   A++ A + 
Sbjct: 902  IGAAAALLISGAPFGFVAILGVIALLGIIIRNSIILVDQIDQDIAAGMERSEAIIGAAVR 961

Query: 1173 RLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYAI 1227
            R RP+++T    V+AL P++   G  W PL YA  GG+ VAT +T+L++P  YA+
Sbjct: 962  RFRPIILTALTAVLALIPIS--RGVFWGPLAYAMMGGILVATVLTILVLPAGYAL 1014



 Score = 65.9 bits (159), Expect = 2e-14
 Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 27/227 (11%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N +R+ +    I   LL   ++ G      M QR+DPE   R   V   WPGA  + +E+
Sbjct: 12  NLSRWAIGHPSIARFLLALIIITGGLGLLRMGQREDPEFTFRVMVVQAVWPGASIQEMED 71

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFRLQEVG---- 131
           ++  ++E  +     ++ + S +R G +++T+ + E     D V D      ++VG    
Sbjct: 72  QVVNKIERKLQETPHLDFVRSYTRAGSAIITVQI-EGDTNADEVADAFYQVRKKVGDIAN 130

Query: 132 QLPDGAGPLTYIKDFGDTSTLMLTVASPRVSGVELDMRAV----------GVARAV---- 177
           +LP+G     +  +FGDT   + +++    S  EL   A+          GV + V    
Sbjct: 131 ELPEGVLGPYFNDEFGDTFITLHSISGDGFSYPELKRFAIEGRDMLLATPGVEKVVVLGD 190

Query: 178 --RALRNDAAGEARAEGGVM------ARASQARVGASGAVATGRRDV 216
               +  D + +  AE G+       A A Q  V  +G+V TG R V
Sbjct: 191 QPEKIYIDLSSKVLAERGLTFNDLRNAIAGQNNVDYAGSVDTGTRSV 237