Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1045 a.a., efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

 Score =  419 bits (1078), Expect = e-121
 Identities = 275/920 (29%), Positives = 466/920 (50%), Gaps = 35/920 (3%)

Query: 312  ANALHPDLWEPAVFASGDDARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRW 371
            A  L  +L  P++     D  + L  +  D  S+  L+   E +R  L ++  V KV+ +
Sbjct: 121  APQLPSNLIGPSINDEYGDVDSILYMMTGDGASYAQLKKAAEGLRQRLLKVAGVSKVNIY 180

Query: 372  GVRPETIFIDWSQERLASLGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSA 431
            G + E I++++S  +LA+LGL PQ +  +LA +N  +P G +ET  + V L   G L  A
Sbjct: 181  GTQDEKIYVEFSHAKLATLGLTPQAIFDSLAKQNAVVPAGTVETSSQRVPLRVTGALDGA 240

Query: 432  TDLAEVMVATSASGAPLYLRDVADVTRSYRAPVENLNHFVHRDADGTWRRGK-AITLAVE 490
              +AE  V   + G    L DVA++   Y  P +              ++GK AI + + 
Sbjct: 241  QAVAETPV--ESGGRVFRLGDVAEIRHGYVDPTDYQVR----------QKGKPAIGIGIV 288

Query: 491  MRSGEHIDAFSREVDAALGDLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVV 550
               G +I     +V AA       +P+ + + + +DQP  V   V  F  S  EA+V+V+
Sbjct: 289  TAKGANILQLGEQVGAATTSFMADVPQGIEIEQIADQPEVVKHAVGEFMRSFVEALVIVL 348

Query: 551  AVAFIGFREWRSALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVA 610
             V+F+    WR+ +++ALS+PL LA+ F +M+++ IDL +I++ +LI+ALGLLVDD ++A
Sbjct: 349  FVSFLALG-WRTGIVVALSVPLVLAIVFIVMNVMAIDLHRITLGALIIALGLLVDDAIIA 407

Query: 611  GDAIKREIAEGRPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIV 670
             + +  ++ +G  R  AA       A  +L  T+     +LP        G +   +  +
Sbjct: 408  VEMMVVKMEQGWDRAKAASFAWESTAFPMLTGTLVTAAGFLPIGFANSGVGEYAGGIFWI 467

Query: 671  VACSLVASRIVSMTFIPLLGSVLLD--AGRREGTVEERRARGLGRLYYAVGGWAIDHRWK 728
            VA +L+AS  V++ F P +G  LL   AG++    +E     + R   A   W +  R  
Sbjct: 468  VAIALIASWFVAVIFTPYIGVKLLPDFAGKKGHNPDEVYHTRIYRALRAAVTWCVRWRGT 527

Query: 729  VLAGSLLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTD 788
            V+  ++ + +A     G ++ QFFP       ++ L LPE    + T +   +A  ++ D
Sbjct: 528  VVTATVGIFIAAVVGFGHVQQQFFPLSERPELFLQLRLPEGTAFDVTMKSVKEAETLLKD 587

Query: 789  RVAAFDAETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLT 848
                 D +           + + T + G G PRFW  + P+L   ++A+++V   D    
Sbjct: 588  -----DGD-----------IATYTAYVGKGSPRFWLGLNPQLPTESFAEIVVVAKDVAAR 631

Query: 849  KELIGPLQQAL-SERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILR 907
            + +   ++QA  S RL +AR  V     GPP+G PVQ R+ G D   +R  + +++ +++
Sbjct: 632  ERIKARIEQASHSGRLAAARVRVDRFNFGPPVGFPVQFRVIGPDTAKVREIAFQVRDVVK 691

Query: 908  ADPDATRVKDNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLT 967
             + +      +W   +   +L VD  +A   G+T  DV++A     +G  VT +R+G   
Sbjct: 692  KNANVVDPHLDWNEQSPYLKLVVDQSRARALGLTPQDVSQALAMLISGAQVTTVRDGVEK 751

Query: 968  VPVVSRLRPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVIS 1027
            + VV+R  P+ER D   +  L +  + G  VPL+Q+A+ EY  E   ++RRN+   + + 
Sbjct: 752  IGVVARAVPNERLDLARIGELTITARNGMAVPLSQVAKVEYSHEEPILWRRNRDMAITVR 811

Query: 1028 CFPREGVLPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMI 1087
                +GV   +V     P +   RA+L P +R+E GG  EE  KG   +  +  + +  +
Sbjct: 812  GDVVDGVQAPDVTNAIWPQLESIRANLQPAYRIETGGAIEESTKGNASIFILFPVMVIAM 871

Query: 1088 YMALLFQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIV 1147
               L+ Q ++  + L+VF   P G+ GA   L +   PFGF+A LG+ +L G+I+ + ++
Sbjct: 872  LALLMIQLQSFPRLLLVFLTAPLGIIGASLGLNVASAPFGFVALLGLIALAGMIMRNAVI 931

Query: 1148 LFDFIEEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQA 1207
            L D IE     G   R A+++A + R RPV++T  A ++A+ PL+    A W P+     
Sbjct: 932  LVDQIESDVAHGSTRREAIVEATVRRARPVVLTALAAILAMIPLS--RSAFWGPMAITIM 989

Query: 1208 GGLTVATFVTLLMVPVLYAI 1227
            GGL VATF+TL  +P LYA+
Sbjct: 990  GGLFVATFLTLFYLPGLYAL 1009



 Score = 47.4 bits (111), Expect = 7e-09
 Identities = 29/146 (19%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 31  LLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEERITRRVEEAVGGNKW 90
           L+ A    G++++  + + +DP   V+ A V   WPGA A+ ++E++   +E+ +    +
Sbjct: 19  LICALGFTGIYSYQRLGRGEDPSFTVKVAVVSAIWPGATAKEMQEQVADPIEKKLQELPY 78

Query: 91  VEKIESVSRTGLSVVTLHLHERVAQTDT--VLDDIGFRLQEVG-QLPDGAGPLTYIKDFG 147
            EK+++ S+   + + +   +    ++   +   +  +L +V  QLP      +   ++G
Sbjct: 79  FEKVQTYSKASFTAMQVTFRDSTPPSEVPHLFYLLRKKLWDVAPQLPSNLIGPSINDEYG 138

Query: 148 DTSTLMLTVASPRVSGVELDMRAVGV 173
           D  +++  +     S  +L   A G+
Sbjct: 139 DVDSILYMMTGDGASYAQLKKAAEGL 164