Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1051 a.a., efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

 Score =  410 bits (1053), Expect = e-118
 Identities = 281/912 (30%), Positives = 465/912 (50%), Gaps = 43/912 (4%)

Query: 322  PAVFASGDDARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFID 381
            P V     D  + +  + +D   +  L+   E+VR  L ++ +V KV+ +G + E IF+D
Sbjct: 132  PEVNDEYGDVDSIVYTLRSDSADYAVLKRMAEQVRQRLLKVPNVSKVTIYGTQDERIFVD 191

Query: 382  WSQERLASLGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVAT 441
            +   +LA+LG+ P+ +  +LA +N   P G ++T+   + L   G       + E  +A+
Sbjct: 192  FDHVKLANLGIAPRAIFDSLAKQNDLAPVGMVQTQSTRIPLRVSGAFDGVRAVEETPIAS 251

Query: 442  SASGAPLYLRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFS 501
            +  G  + L D+A V+R +  P +    F+ R      R   A+ + + MR G +I    
Sbjct: 252  N--GTVIRLGDIATVSRGFVDPPQ----FLVRQ-----RGVPALAIGIVMRKGANILELG 300

Query: 502  REVDAALGDLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWR 561
             +V+A++ ++ +  P  +   R ++QP  V + V  F  S  EA+ +V+ V+F+    WR
Sbjct: 301  ADVEASMAEVERATPVGVTFERIANQPAVVRDAVGDFMRSFVEALAIVLFVSFVSLG-WR 359

Query: 562  SALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEG 621
              +++A S+PL L + F +M  +GIDL +IS+ +LI+ALGLLVDD ++A + +  ++ +G
Sbjct: 360  VGIVVATSVPLVLGIVFTLMLTIGIDLHRISLGALIIALGLLVDDAIIAVEMMVVKMEQG 419

Query: 622  RPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIV 681
              R  AA       A  +L  T+     +LP  +     G +  S+  VV  +L+AS  V
Sbjct: 420  FDRARAASFAWESTAFPMLTGTLVTAAGFLPVGMAASGTGEYAGSIFWVVGIALLASWAV 479

Query: 682  SMTFIPLLGSVLLDAGRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLA---GSLLLVV 738
            ++   P LG VLL      GT       GL R + +V  W I HR  V+     +  + +
Sbjct: 480  AVILTPYLGFVLLPRSLSTGTAHAVYDSGLYRRFRSVVTWCIHHRLIVIGITIAAFAISI 539

Query: 739  AGFWLQGQLKPQFFP-KDRSYLSYVDLWLPEDATVEATARVAADAARIVT--DRVAAFDA 795
             GF   G+++ QFFP  DR+ L +V+L LP  + +EAT   A  A  +V   D V  +  
Sbjct: 540  VGF---GKIQRQFFPTSDRTEL-FVELRLPGGSGIEATLVNANQAEALVAGDDDVVTW-- 593

Query: 796  ETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPL 855
                            + + G G PRF  +V PEL   +Y +L++   D+   + +   +
Sbjct: 594  ----------------STYVGKGPPRFLLNVNPELPNESYGELVIVTKDSAARERVKRKV 637

Query: 856  QQALSE-RLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATR 914
            +QA+++  +  AR  V  L  GPPI  PVQ R+ G+D   +R+ + +++ I+R +P+   
Sbjct: 638  EQAVADGAIAGARVRVRRLAYGPPIKFPVQFRVIGEDPNTVRSIAYQVRDIMRGNPNVIE 697

Query: 915  VKDNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRL 974
             + +W       RL VD D+A   G+    +++      TG  VT +R+    V VV+R 
Sbjct: 698  PQLDWNEQMPSVRLVVDQDRARALGLDPQTISQTLQMLMTGAPVTTVRDRTEKVVVVARA 757

Query: 975  RPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGV 1034
               +R D   ++ L V  + G  VPL+QIAE   G E A  +RR++   + +    R+GV
Sbjct: 758  IAAQRNDLGAIDDLTVLSRNGVPVPLSQIAEIREGHEEAIQWRRDRDMAITVRSDVRDGV 817

Query: 1035 LPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQ 1094
                V +    A+   R  LP G+R+E GG  E+  K    L  V+   + ++   L+ Q
Sbjct: 818  QAPFVSSMVWAALADLRQHLPAGYRIELGGAIEDSSKANGALFAVVPAMLVVMLTVLMIQ 877

Query: 1095 FRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEE 1154
             ++  K  +V    P G+ GA A L L G+PFGF+A LG+ +L G+I+ + ++L D IE+
Sbjct: 878  LQSFAKLALVLLTAPLGLIGACAGLLLFGKPFGFVALLGLIALAGMIIRNSVILVDQIEQ 937

Query: 1155 KREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVAT 1214
                G     A++ A + R RPV++T  + V+A+ PL     + W P+  A  GGL VAT
Sbjct: 938  DIAAGHPRDEAIIGATVRRARPVVLTALSAVLAMIPLT--RSSFWGPMAVAIMGGLLVAT 995

Query: 1215 FVTLLMVPVLYA 1226
             +TLL +P LYA
Sbjct: 996  VLTLLFLPALYA 1007



 Score = 54.7 bits (130), Expect = 4e-11
 Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 37  VWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEERITRRVEEAVGGNKWVEKIES 96
           V G+ ++  + + +DP   ++ A V   WPGA AE ++ ++  R+E+ +    W +K+ +
Sbjct: 26  VAGLLSYQRLGRAEDPSYTIKVAVVTATWPGATAEEMQLQVADRIEKKLQELPWFDKVTT 85

Query: 97  VSRTGLSVVTLHLHERV--AQTDTVLDDIGFRLQEV-GQLPDGAGPLTYIKDFGDTSTLM 153
            S+ G +   +   +    AQ   +   I  ++ +V   LPDG        ++GD  +++
Sbjct: 86  YSKPGFTAAQMEFRDTTPPAQIPWLFYLIRKKMADVKPDLPDGVAGPEVNDEYGDVDSIV 145

Query: 154 LTVAS 158
            T+ S
Sbjct: 146 YTLRS 150