Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1016 a.a., efflux RND transporter permease subunit from Rhodopseudomonas palustris CGA009

 Score =  402 bits (1034), Expect = e-116
 Identities = 279/896 (31%), Positives = 441/896 (49%), Gaps = 32/896 (3%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D    + A  +D  + R L    E+VRA + ++ +VG+V   G + E IF+++S  ++A+
Sbjct: 140  DVFGNIYAFTSDGLTQRQLRDKVEEVRAKVLQVPNVGRVDIVGAQDEVIFLEFSPRKVAA 199

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            LGLD + +  +L A+N   P G L+     + +   G+  S   L  + +  +    PL 
Sbjct: 200  LGLDQRTIVSSLQAQNAIAPSGVLQAGPERISVRVSGQFTSEESLKAINLRVNDRFFPL- 258

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALG 509
              DVA + R Y  P  +L  F             AI L + M++G ++  F   +   + 
Sbjct: 259  -TDVATIRRGYVDPPTSLFRF---------NGEPAIALTIGMKAGANLLQFGEALKEEMK 308

Query: 510  DLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALS 569
             ++  LP    V   SDQP+ V E V  FT +L EAV +V+ ++FI     R+ L++A+S
Sbjct: 309  RISADLPVGAEVHLVSDQPQIVDEAVSGFTRALFEAVAIVLVISFISLG-MRAGLVVAIS 367

Query: 570  IPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAW 629
            IPL LA+TF +M   GI LQ+IS+ +LI+ALGLLVDD ++A + +   +  G     AA 
Sbjct: 368  IPLVLAITFMVMSYSGISLQRISLGALIIALGLLVDDAMIAVEMMVARLEVGDSLAKAAT 427

Query: 630  LGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLL 689
               T  A  +L  T+  +  ++P  L     G F +++ +V+A SL+ S IV++ F PLL
Sbjct: 428  HVYTSTAFPMLTGTLVTVAGFIPIGLNNSAAGEFTFTLFVVIAVSLLTSWIVAVLFTPLL 487

Query: 690  GSVLLDAGRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKP 749
            G  +L    +     E + R    ++    G+ + HRW  +  +L          G ++ 
Sbjct: 488  GVTILPDKMKHH--HETKGR-FASMFSGTLGFCMRHRWLTIGLTLAAFALSLVGMGFVQQ 544

Query: 750  QFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLPPALR 809
            QFFP        VD  LP+++++  T    A   R         +A TGR      P + 
Sbjct: 545  QFFPNSDRKELIVDWNLPQNSSIAETNAQMAKFER---------EALTGR------PGID 589

Query: 810  SVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERLPSARAD 869
              + + G G PRF  S   E     + Q+++          L   LQ  L +  P   A 
Sbjct: 590  HWSTYVGQGAPRFVLSFDVEPSNATFGQMVIVTKSLADRDRLRQELQAYLRKTFPGTDAL 649

Query: 870  VMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARLR 929
            V  L+ GPP+G PVQ R+ G DI  +R  +++L  I+ A+P    V  +W     V ++ 
Sbjct: 650  VKLLDIGPPVGRPVQYRVSGPDISKVRGFAQQLAGIVAANPHLGEVVFDWMEPARVIKVD 709

Query: 930  VDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGLY 989
            V  DKA   GVT  D+A        G T+T +R+    V V+ R    ER     +  L 
Sbjct: 710  VLQDKARQLGVTSEDIASTLNGILDGATITQVRDDIYLVNVLGRANDAERGSIETLRNLQ 769

Query: 990  VAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIGR 1049
            ++G  G  VPLA +A   Y +E   I+RR +   V +     + V P+ VV +   ++G 
Sbjct: 770  LSGGSGQTVPLAAVATFRYELEQPTIWRRARLPTVTVKASVIDEVQPATVVEQLKHSVGE 829

Query: 1050 FRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAIP 1109
            F A LP G+ +  GG  EE  K    +  V+ I + ++   L+ Q ++  +  +VFA  P
Sbjct: 830  FTAKLPVGYSVTVGGAVEESGKSQAPIIAVVPIMLFVMATVLMIQLQSFHRLFLVFAVAP 889

Query: 1110 YGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLDA 1169
              + G  AAL     P GF+A LG+ +LIG+++ + ++L   IE+ R EG     A+++A
Sbjct: 890  LALIGVVAALLPSRAPLGFVAILGVLALIGILIRNSVILIVQIEQLRSEGRPPWDAVVEA 949

Query: 1170 GIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLY 1225
               R+RP+M+T AA  +AL P+A      W P+ YA  GG+ V T +TLL +P LY
Sbjct: 950  TEHRMRPIMLTAAAASLALIPIARE--VFWGPMAYAMMGGIIVGTVLTLLFLPALY 1003



 Score = 50.8 bits (120), Expect = 6e-10
 Identities = 28/136 (20%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N + + ++ R + W  ++A +  G++++  + + +DP   ++   +   WPGA AE    
Sbjct: 5   NLSDWALQHRSLVWYFMIAFMAAGLFSYLDLGREEDPAFTIKTMVIQAKWPGASAEETTR 64

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFR--LQEV-GQ 132
           ++T R+E+ +   + ++  +S++  G + V ++L +     D     +  R  + ++ G 
Sbjct: 65  QVTDRIEKKLEELESLDYTKSITTPGETTVFVNLRDTTKARDVQPTWVRVRNMINDIKGD 124

Query: 133 LPDGAGPLTYIKDFGD 148
            P G     +   FGD
Sbjct: 125 FPQGVVGPAFNDRFGD 140