Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1029 a.a., cation/multidrug efflux pump from Klebsiella michiganensis M5al

 Score =  365 bits (936), Expect = e-104
 Identities = 273/959 (28%), Positives = 454/959 (47%), Gaps = 45/959 (4%)

Query: 279  HTEPGLVVLDVSTRHDAAALSARLAVFRA-ERVGANA--LHPDLWEPAVFASGDDARAAL 335
            +T PGL    +S +        +   ++A +++G  A  L   +  P       D   AL
Sbjct: 88   YTRPGLAYTMLSLQDSTPPSQVQEEFYQARKKLGDEAKNLPAGVIGPMFNDEFSDVTFAL 147

Query: 336  EAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLDPQ 395
             A+ A     R L    E +R  L  +  V KV+  G + E IF+ +S +RLA+LG+ PQ
Sbjct: 148  FALKAKGEPQRLLVRDAESLRQRLLHVPGVKKVNIIGEQAERIFVSFSHDRLATLGVSPQ 207

Query: 396  QVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDVAD 455
             +   L ++N   P G ++T+G  V +  +G       + E  +     G  L L DVA 
Sbjct: 208  DIFSALNSQNVLTPAGSIDTKGPQVFIRLDGAFDKLEKIRETPIVVQ--GRTLQLSDVAT 265

Query: 456  VTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALGDLTQRL 515
            V R Y  P      F +R+   T     A+ L + MR G +     + +DA    +   +
Sbjct: 266  VERGYEDPAT----FQNRNQGET-----ALLLGIVMRDGWNGLDLGKALDAETAKINAGM 316

Query: 516  PEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLTLA 575
            P  + + + +DQ   ++  VD F +    A+++V+ V F+    WR  +++A ++PLTLA
Sbjct: 317  PLGMTLTKVTDQSVNISSAVDEFMIKFFVALLVVMVVCFVSMG-WRVGVVVAAAVPLTLA 375

Query: 576  MTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPTKL 635
            + F +M   G +  +I++ SLILALGLLVDD ++A + +  ++ EG  R  A+    +  
Sbjct: 376  IVFVVMEASGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRIKASAYAWSHT 435

Query: 636  ARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVLL- 694
            A  +L  T+   V ++P        G +  +M  +V  +L+AS IV++ F P LG  +L 
Sbjct: 436  AAPMLAGTLVTAVGFMPNGFAQSTAGEYTSNMFWIVGIALIASWIVAVVFTPYLGVKMLP 495

Query: 695  DAGRREG----TVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWL-QGQLKP 749
            D  + EG        R      RL      W I  +W ++AG+++ V     L  G +K 
Sbjct: 496  DIKKVEGGHAAIYNTRHYNRFRRLL----AWVIARKW-IVAGTVIAVFTVAILGMGLVKK 550

Query: 750  QFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLPPALR 809
            QFFP        V++ +P    +E T   AA        ++ A+  +   A        +
Sbjct: 551  QFFPTSDRPEVLVEVQMPYGTAIEQTNATAA--------KIEAWLRKQKEA--------K 594

Query: 810  SVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERL-PSARA 868
             VT + G G PRF+ ++ PEL  P++A+++V   +    + L   L++A++  L P AR 
Sbjct: 595  IVTSYIGQGAPRFFLAMAPELPDPSFAKIVVLTDNPEAREALKFRLREAVAGGLTPEARV 654

Query: 869  DVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARL 928
             V +L  GP    PV  R+ G D   LR  +++++ +++A P    V  +WG        
Sbjct: 655  RVTQLVFGPYSPYPVAYRVMGPDPTTLREIADKVEKVMQASPMMRTVNTDWGPRVPALHF 714

Query: 929  RVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGL 988
             ++ D+    G+T    A+      +G  +T++RE   +V V+ R   D R D   + G 
Sbjct: 715  TLNQDRLQAVGLTSNAAAQQLQFLLSGIPITSVREDIRSVQVMGRAAGDIRLDPAKIAGF 774

Query: 989  YVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIG 1048
             + G  G R+PL+QI E E  ME   + RR++   + +     E + P +V      A+ 
Sbjct: 775  TLVGAAGQRIPLSQIGEIEVQMEEPVMRRRDRIPTITVRGDIAENLQPPDVSTAITKALQ 834

Query: 1049 RFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAI 1108
                 LP G+R+E  G  EE  K  K +  +  I IAM  + ++ Q R+    ++VF   
Sbjct: 835  PVIDTLPDGYRIEQAGSIEESGKATKAMVPLFPIMIAMTLLIIILQVRSMAAMVMVFLTA 894

Query: 1109 PYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLD 1168
            P G+ G    L L  QPFG    +G+ +L G+++ + ++L   I    +EG     A+++
Sbjct: 895  PLGLIGVVPTLLLFNQPFGINTLVGLIALSGILMRNTLILIGQIHHNEQEGLAPFHAVVE 954

Query: 1169 AGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYAI 1227
            A + R RPV++T  A ++A  PL       W  L Y   GG    T +TL+ +P +YAI
Sbjct: 955  ATVQRARPVLLTAMAAILAFIPLT--HSVFWGTLAYTLIGGTFGGTIITLVFLPAMYAI 1011



 Score = 56.2 bits (134), Expect = 1e-11
 Identities = 26/96 (27%), Positives = 53/96 (55%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N +   V +R I   L++   V GV ++  + + +DP   V+   ++ AWPGA A+ +++
Sbjct: 7   NLSALAVRERSITLFLIILITVAGVLSFFELGRAEDPPFTVKQMTIISAWPGATAQEMQD 66

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHE 111
           ++   +E+ +   KW ++ E+ +R GL+   L L +
Sbjct: 67  QVAEPLEKRMQELKWYDRSETYTRPGLAYTMLSLQD 102