Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1047 a.a., cation/multidrug efflux protein from Herbaspirillum seropedicae SmR1

 Score =  398 bits (1023), Expect = e-114
 Identities = 272/917 (29%), Positives = 443/917 (48%), Gaps = 51/917 (5%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D    + A+A D +S   L  Y +++R  L  +  V K+  +G R E I+ID    R+  
Sbjct: 143  DVYTNIYALAGDGFSPAQLRDYADQLRGELLHVPGVAKIDYFGERNEHIYIDIGNARMTR 202

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            LG+ PQQ+A  +  +N  +PGG + T    V +   G+  +   L E ++    +     
Sbjct: 203  LGISPQQLADAIGGQNAVVPGGLITTGNDRVYVRPTGQFDNLRALEEKII--QINNRSFR 260

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALG 509
            L D+A +TR Y  P E         A+G       + + V M+ G  +    + +DA   
Sbjct: 261  LGDIATITRGYDEPQEQAMR-----ANGQ----PVLGIGVTMQPGGDVIRLGKALDARTE 311

Query: 510  DLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALS 569
            +L +RLP  L +   S  P  V + VD F  ++ EAV +V+ V+ +     R+ +++ +S
Sbjct: 312  ELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLGI-RTGMVVVIS 370

Query: 570  IPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAW 629
            IP+ LA+T   M+L  I L ++S+ +L+LALGLLVDD ++A + +  ++ +G  RR AA 
Sbjct: 371  IPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQGWNRRRAAA 430

Query: 630  LGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLL 689
               T  A  +L  T+  +  +LP  L     G +  S+  V A +L+ S + ++  IPLL
Sbjct: 431  FAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSWLAAVVLIPLL 490

Query: 690  GSVLLD------------AGRREGTVEERRARGL--GRLYYAVG---GWAIDHRWKVLAG 732
            G  +L             A    G  EE     +   R+Y  +     W +  R +V+  
Sbjct: 491  GYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWCVAFRGRVVIA 550

Query: 733  SLLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAA 792
            + +L +        +  QFFP        +DL LPE A+ EAT R A     ++ DR   
Sbjct: 551  TTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRMEALLKDR--- 607

Query: 793  FDAETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELI 852
                         P +     F G G PRF+  +  +L  PN+AQ +V        + L 
Sbjct: 608  -------------PQIDHYVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALA 654

Query: 853  GPLQQALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDA 912
              L++ L  +    R  +  LENGPP+G PVQ R+ G+ IP +RA +E++ A +R +  A
Sbjct: 655  RALEEPLRRQFSGVRTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMRKESRA 714

Query: 913  TRVKDNWG--ADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPV 970
            T ++ +W   A   V+   +D  +AA  G+T   ++       +G T+T  RE    + V
Sbjct: 715  TNIQFDWDEPAQRSVS-FEIDQKRAAQLGLTSQQISNFLAMQLSGYTITQYRERDKLISV 773

Query: 971  VSRLRPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFP 1030
              R    ER D   +  L +    G  VPLA + +    +E   I+ RN+Q  + +    
Sbjct: 774  DLRAPRSERVDPARLATLSMPTANGP-VPLATLGQFNNTLEYGVIWERNRQPTITVLADV 832

Query: 1031 REGVLPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMA 1090
            R GV   +V       +   RA+LP G+R++ GG  EE  K    ++  M + +  + + 
Sbjct: 833  RPGVQGIDVTNDVNQKLNALRAELPVGYRIDVGGPVEENAKAQSSISAQMPLMVIAVLLL 892

Query: 1091 LLFQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFD 1150
            L+ Q ++  + ++V    P G+ G   AL L GQPFGF+A LG  +++G+I+ + ++L D
Sbjct: 893  LMVQLQSFGRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVD 952

Query: 1151 FIEEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGL 1210
             IE+    G     A++ A + R RP+ +T AA V+AL PL       + P+  A  GG+
Sbjct: 953  QIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSN--FFGPMATALMGGI 1010

Query: 1211 TVATFVTLLMVPVLYAI 1227
            T+AT +TL  +P LYA+
Sbjct: 1011 TIATILTLFYLPALYAL 1027



 Score = 49.3 bits (116), Expect = 2e-09
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 17  SARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEER 76
           SA     Q  + ++L + TL+ G+ ++  + Q +DP    +   +   WPGA A +V+E+
Sbjct: 10  SAWTLQHQALVTFILALVTLL-GIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQ 68

Query: 77  ITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFRLQEVGQ---- 132
           IT R+   +     V+ + S SR G S +   + +    +         R ++VG     
Sbjct: 69  ITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVR-KKVGDMAAT 127

Query: 133 LPDGAGPLTYIKDFGDTSTLMLTVASPRVSGVEL 166
           LP G     +  +FGD  T +  +A    S  +L
Sbjct: 128 LPQGVKGPYFNDEFGDVYTNIYALAGDGFSPAQL 161