Pairwise Alignments
Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710
Subject, 1065 a.a., efflux RND transporter permease subunit from Dyella japonica UNC79MFTsu3.2
Score = 400 bits (1029), Expect = e-115
Identities = 292/988 (29%), Positives = 463/988 (46%), Gaps = 70/988 (7%)
Query: 277 RLHTEPGLVVLDVSTRHDAAALSARLAVFRA-ERVG--ANALHPDLWEPAVFASGDDARA 333
R ++ PG ++ + + A A S ++ ++VG L P + P D
Sbjct: 96 RSYSRPGESLIFFNIKDSAPASSVPDTWYQVRKKVGDIRAQLPPGVQGPFFNDEFGDVYT 155
Query: 334 ALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLD 393
+ A+ D ++ L Y +++RA L R+ VGKV G + + I I+ RL+ LG+
Sbjct: 156 NIYALEGDGFTPAQLHDYADQLRAELLRVPGVGKVDFLGDQNQRITIEIPNARLSKLGIS 215
Query: 394 PQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDV 453
PQQ+A+ + A+N G + T V + G+ L ++ A G L D+
Sbjct: 216 PQQIAEAINAQNAVASAGVMSTADDRVYVRPSGQFSDVAALENTLLR--AGGQSFRLGDI 273
Query: 454 ADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALGDLTQ 513
A + R Y P F+ + G + + M+ G + + +D A L +
Sbjct: 274 ATIRRGYDDPPGQQVRFMSQQVLG---------VGITMQPGGDVIHLGKALDEATARLQK 324
Query: 514 RLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLT 573
RLP L + + P V VD F S+ EAV +V+ V+ + R+ +++ +SIP
Sbjct: 325 RLPAGLKLAEVTSMPHAVAHSVDDFLESVAEAVAIVLLVSLLSLG-LRTGMVVVISIPFV 383
Query: 574 LAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPT 633
LA T M L+GI L ++S+ +L+LALGLLVDD ++A + + ++ +G R AA T
Sbjct: 384 LAATALCMELMGIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQGWSRTRAAAFAYT 443
Query: 634 KLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVL 693
A +L T+ + +LP L G + S+ V A +L+ S + ++ IPLLG
Sbjct: 444 STAFPMLTGTLVTVSGFLPIALAKSGTGEYTRSIFEVSAIALLLSWLAAVIVIPLLGYHF 503
Query: 694 LD---AGRREGTV-----------EERRARGLGRLYYAVGG------------------W 721
L A + G+ E RRA R + GG +
Sbjct: 504 LPEHHARVQPGSEWWARFMPARWNEARRANAKTRPEH--GGDIEIYDTAFYQRFRRMLHY 561
Query: 722 AIDHRWKVLAGSLLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAAD 781
+ HR VL +++L V G + QFFP +DL LPE A+ +AT
Sbjct: 562 CLTHRVLVLVVTVVLFVVSMAGFGLVPKQFFPSSDRPELLIDLRLPEGASFDATLVQVKR 621
Query: 782 AARIVTDRVAAFDAETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVE 841
+++ DR + + F G G PRF+ + +L QPN+AQ +V
Sbjct: 622 MEQVLKDR----------------KEVANYVSFVGSGAPRFYLPLDQQLGQPNFAQFVVT 665
Query: 842 VSDNHLTKELIGPLQQALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESER 901
D + L L L+ + R V LENGPP+G PVQ R+ GDDI +R +E+
Sbjct: 666 AKDVEQREALAKALDSVLAHDFSAVRTRVSRLENGPPVGFPVQFRVSGDDIATVRGIAEK 725
Query: 902 LKAILRADPDATRVKDNWGADTFVARLRVDPDKAALS--GVTMLDVARATGNAATGTTVT 959
+ ++RADP V+ +W + +R D D+AA GV+ DVA + +GTTVT
Sbjct: 726 IATVMRADPRTRNVQFDWD-EPAERSVRFDIDQAAARRLGVSSQDVADFLAMSLSGTTVT 784
Query: 960 ALREGRLTVPVVSRLRPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRN 1019
RE + V R ER +E L + GG +PLAQ+ + YG+E I+ R+
Sbjct: 785 QYRERDKLIGVDLRAPKSERVQPDQIERLALPTPGGAAIPLAQLGKVHYGLEYGVIWARD 844
Query: 1020 QQRCVVISCFPREGVLPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGV 1079
+Q + + R G +V +G R LP G+R+E GG E+ K +
Sbjct: 845 RQPSINVQSDTRNGAQGLDVTNAIDAKLGELRKGLPVGYRIEVGGSVEQNAKAQGSINEQ 904
Query: 1080 MGISIAMIYMALLFQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIG 1139
M + + + L+ Q ++ + +V P G+ G A+L L QPFGF+A LG ++ G
Sbjct: 905 MPLMVIAVLTLLMIQLQSIGRTFMVVLTAPLGLIGVIASLLLFRQPFGFVAMLGTIAMFG 964
Query: 1140 VIVSHIIVLFDFIEEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALW 1199
+I+ + ++L D IE+ +G A++ A + R RP+ +T AA V+AL PL +
Sbjct: 965 IIMRNSVILVDQIEQDIRDGHSRWEAIVGATVRRFRPITLTAAAAVLALIPLLRSN--FF 1022
Query: 1200 EPLCYAQAGGLTVATFVTLLMVPVLYAI 1227
P+ A GG+TVAT +TL +P LYA+
Sbjct: 1023 GPMATALMGGITVATILTLFYLPALYAV 1050
Score = 54.3 bits (129), Expect = 5e-11
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 3 EGGHNDERWLHTRNSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVL 62
E GH + R+ N + + + + L+V V+G+ ++ + Q +DP + +
Sbjct: 8 ESGHEEGRF----NLSAWALRHQSFVIFLMVMITVFGMLSYSRLSQSEDPPFTFKVMVIQ 63
Query: 63 VAWPGAPAERVEERITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDD 122
WPGA A++V++++T R+ + ++ + S SR G S++ ++ + A +V D
Sbjct: 64 SFWPGADAKQVQDQVTDRISRKLQETPSIDFLRSYSRPGESLIFFNIKDS-APASSVPDT 122
Query: 123 IGFRLQEVG----QLPDGAGPLTYIKDFGDTST 151
++VG QLP G + +FGD T
Sbjct: 123 WYQVRKKVGDIRAQLPPGVQGPFFNDEFGDVYT 155
Score = 32.7 bits (73), Expect = 2e-04
Identities = 108/535 (20%), Positives = 198/535 (37%), Gaps = 77/535 (14%)
Query: 716 YAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEAT 775
+ + WA+ H+ V+ +++ V G +L P + + + P
Sbjct: 16 FNLSAWALRHQSFVIFLMVMITVFGMLSYSRLSQSEDPPFTFKVMVIQSFWP-------- 67
Query: 776 ARVAADAARI---VTDRVAAFDAETGRAAKGLPPALRSVTVFTGGGGPRFWFSV---TPE 829
ADA ++ VTDR++ ET P++ + ++ G +F++ P
Sbjct: 68 ---GADAKQVQDQVTDRISRKLQET--------PSIDFLRSYSRPGESLIFFNIKDSAPA 116
Query: 830 LRQPN-YAQLLVEVSD--NHLTKELIGPLQQALSERLPSARADVMELENGPPIGVPVQLR 886
P+ + Q+ +V D L + GP ++ ++ LE P QL
Sbjct: 117 SSVPDTWYQVRKKVGDIRAQLPPGVQGPF---FNDEFGDVYTNIYALEGDG--FTPAQLH 171
Query: 887 LYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARLRVDPDKAALS--GVTMLD 944
Y D LRAE R+ + + D + + R+ ++ A LS G++
Sbjct: 172 DYADQ---LRAELLRVPGVGKVDFLGDQNQ----------RITIEIPNARLSKLGISPQQ 218
Query: 945 VARATG--NAATGTTVTALREGRLTVPVVSRLRPDER-ADATDVEGLYVAGQGGTRVPLA 1001
+A A NA V + + R+ V RP + +D +E + GG L
Sbjct: 219 IAEAINAQNAVASAGVMSTADDRVYV------RPSGQFSDVAALENTLLRA-GGQSFRLG 271
Query: 1002 QIAEPEYGMETAR----IFRRNQQRCVVISCFPREGVLPSEVVARAMP-AIGRFRADLPP 1056
IA G + F Q V I+ P V+ + +A+ A R + LP
Sbjct: 272 DIATIRRGYDDPPGQQVRFMSQQVLGVGITMQPGGDVIH---LGKALDEATARLQKRLPA 328
Query: 1057 GFRL----EFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAIPYGM 1112
G +L V F E ++I ++ L R ++V +IP+ +
Sbjct: 329 GLKLAEVTSMPHAVAHSVDDFLESVAE-AVAIVLLVSLLSLGLRTG---MVVVISIPFVL 384
Query: 1113 TGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLDAGIV 1172
+ LMG ++ + +G++V I+ + + K E+G A A
Sbjct: 385 AATALCMELMGIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQGWSRTRAAAFAYTS 444
Query: 1173 RLRPVMITVAATVIALFPLAL---HGGALWEPLCYAQAGGLTVATFVTLLMVPVL 1224
P++ TV P+AL G + A L ++ ++++P+L
Sbjct: 445 TAFPMLTGTLVTVSGFLPIALAKSGTGEYTRSIFEVSAIALLLSWLAAVIVIPLL 499