Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1039 a.a., efflux RND transporter permease subunit from Ralstonia sp. UNC404CL21Col

 Score =  413 bits (1062), Expect = e-119
 Identities = 279/912 (30%), Positives = 451/912 (49%), Gaps = 46/912 (5%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D   ++ A++AD +++R L  Y + +R  L R+ +V KV   G + E I+I++ Q +L+ 
Sbjct: 142  DVYGSIYALSADGFTYRQLNDYADAIRQQLLRVPNVAKVELLGDQDEKIYIEFQQAKLSQ 201

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            +GLD   +A  ++ +N   P G L T    V +   G+     DL  + +        + 
Sbjct: 202  MGLDINSIATQISQQNNIGPSGVLVTPTDNVQIRLSGQFSDIRDLENLTLRGPGGTTNIR 261

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALG 509
            L D+A V   Y  P      F  ++  G         L + M  G  I    +++ A + 
Sbjct: 262  LGDIATVKHGYVDPPHAKMRFNGKEVIG---------LGISMTKGGDIIQLGKDLRATVD 312

Query: 510  DLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFR----------E 559
             +  +LP  + + +  +QP+ V   V  F   L EAVV+V+ V+F+              
Sbjct: 313  KIRAKLPMGIEMQQVQNQPKSVQSSVGEFVHVLIEAVVIVLGVSFLSLGLHTKPKLRIDV 372

Query: 560  WRSALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIA 619
            W   L++ L+IPL LA+TF  M++  I L +IS+ +LI+ALGLLVDD ++A + + R++ 
Sbjct: 373  W-PGLVVGLTIPLVLAVTFLFMNIFDIGLHKISLGALIIALGLLVDDAIIAVEMMVRKLE 431

Query: 620  EGRPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASR 679
            EG  +  AA    T  A  +L  T+     +LP  L     G + + +  V A +LV S 
Sbjct: 432  EGFSKMEAATFAYTSTAMPMLTGTLITATGFLPVGLARSTVGEYTFGIFAVTALALVLSW 491

Query: 680  IVSMTFIPLLGSVLLDAGRREGTVEERRARGL--GRLYYAVGGWA---IDHRWKVLAGSL 734
              ++ F+P LG +LL   R +  VE      L     Y    GW    +++R  V+  +L
Sbjct: 492  FAAVVFVPYLGFLLL---RTKSHVEGGGHHELFDTPFYNRFRGWVNWCVEYRKTVIVITL 548

Query: 735  LLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFD 794
            +    G +    ++ QFFP        V+LWLPE ++   T    A+A R        F+
Sbjct: 549  VAFGLGVFGFKYVEKQFFPDSSRPELMVELWLPEGSSFNQTE---AEAKR--------FE 597

Query: 795  AETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGP 854
            A   +        + SVT+F G G PRF+  +   L Q N AQ +V  +     + +   
Sbjct: 598  ALMRKEQN-----VDSVTLFIGSGAPRFYLPLDQILPQTNVAQAIVMPTSLEAREGVRQH 652

Query: 855  LQQALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATR 914
            +   L  + P  R  V  L NGPP+  PVQ R+ G DI  +R  ++++KAI+ A+P+   
Sbjct: 653  VIGLLKSQFPHLRGRVKLLPNGPPVPYPVQFRVMGPDIGGVRKIADQVKAIMSANPNTVG 712

Query: 915  VKDNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRL 974
            V DNW  +  V RL +D DKA   GV+   +++ T    +G  +   R+G   + +V R 
Sbjct: 713  VNDNWNENVKVLRLDIDQDKARALGVSTGSISQVTQTVMSGAPIAQYRDGDKLLDIVMRP 772

Query: 975  RPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGV 1034
            + DER     ++ + V    G  VPL Q+A   +  E   I+R N+   + +     +GV
Sbjct: 773  QEDERNTLDALQRVQVPTGSGRTVPLTQVARVGFAWEPGVIWRENRDYGITVQSDVVDGV 832

Query: 1035 LPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQ 1094
                V A+  P + + RADLPP ++++  G  EE       +A  M + I +I+  L+ Q
Sbjct: 833  QGPTVTAQINPLLDKIRADLPPDYQIKIAGAEEESANAGASIAAQMPLCIFIIFTLLMLQ 892

Query: 1095 FRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEE 1154
              +  + ++VF   P G+ GA A L L+  P GF+A LGI +LIG+I+ + ++L D IE+
Sbjct: 893  LHSFSRSVMVFLTGPLGLIGAAATLLLLRAPMGFVAQLGITALIGMIIRNSVILVDQIEQ 952

Query: 1155 KREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVAT 1214
                G     A+++A + R RP+++T AA V+A+ PL+      W P+  A  GGL +AT
Sbjct: 953  DVAAGVPTWNAIVEAAVRRFRPIILTAAAAVLAMIPLS--RSVFWGPMAAAIMGGLIIAT 1010

Query: 1215 FVTLLMVPVLYA 1226
             +TLL +P LYA
Sbjct: 1011 VLTLLFLPALYA 1022



 Score = 66.6 bits (161), Expect = 1e-14
 Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 4/140 (2%)

Query: 13  HTR-NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAE 71
           H+R N +R+ +E + +   LLVA L+ G++A+  + Q +DP    RA  V   WPGA AE
Sbjct: 3   HSRFNLSRWALEHQPLTRFLLVALLLGGIFAYSKLGQDEDPPFTFRAMVVQAFWPGATAE 62

Query: 72  RVEERITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHER--VAQTDTVLDDIGFRLQE 129
           ++  ++T ++E+A+    +  KI S S+ G ++VT  L +     +T  +   +  ++ +
Sbjct: 63  QMSRQVTDKIEKALQEVPYAWKIRSYSKPGETLVTFQLADTSPAKETQQLWYTVRKKVGD 122

Query: 130 VG-QLPDGAGPLTYIKDFGD 148
           +   LP G     +  DFGD
Sbjct: 123 IAPTLPQGVRGPYFNDDFGD 142