Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1045 a.a., Multidrug efflux pump subunit AcrB from Paraburkholderia bryophila 376MFSha3.1

 Score =  355 bits (911), Expect = e-101
 Identities = 263/954 (27%), Positives = 447/954 (46%), Gaps = 35/954 (3%)

Query: 279  HTEPGLVVLDVSTRHDAAALSARLAVFRA-ERVGANA--LHPDLWEPAVFASGDDARAAL 335
            +T PGL    ++          +   ++A +++G  A  L   +  P V     D   AL
Sbjct: 88   YTRPGLAFTTLTLLDSTPPSEVQEEFYQARKKIGDEAANLPAGVIGPMVNDEYADVTFAL 147

Query: 336  EAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLASLGLDPQ 395
             A+ A     R L    E +R  L  +  V KV+  G + E I++ +S +RLA+LG+ PQ
Sbjct: 148  FALKARGEPQRLLVRDGETLRQRLLHVPGVKKVNIIGEQAERIYVQFSHDRLATLGVSPQ 207

Query: 396  QVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLYLRDVAD 455
             V   L  +N   P G +ET+G  V +  +G   +   + +  V     G  L L D+A 
Sbjct: 208  DVFAALNGQNALTPAGSVETKGPEVFIRLDGAFDNLQKIRDTPVVVQ--GRTLKLSDIAT 265

Query: 456  VTRSYRAPVENLNHFVHRDADGTWRRGKAITLAVEMRSGEHIDAFSREVDAALGDLTQRL 515
            V R Y  P   L   +  + +       A+ L + MR G +     + +D+ +G +   L
Sbjct: 266  VERGYEDPATFL---IRNNGE------PALLLGIVMRDGWNGLDLGKALDSEVGAINGGL 316

Query: 516  PEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMALSIPLTLA 575
            P  + + + +DQ   +   VD F L    A+++V+ V+F+    WR+ L++A ++PLTLA
Sbjct: 317  PLGMSLTKVTDQAVNIHSAVDEFMLKFFVALLVVMFVSFVSMG-WRAGLVVAAAVPLTLA 375

Query: 576  MTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAAWLGPTKL 635
            + F +M   G +  +I++ SLILALGLLVDD ++A + +  ++ EG  R  A+    +  
Sbjct: 376  VVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYSRVAASAYAWSHT 435

Query: 636  ARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPLLGSVLL- 694
            A  +L  T+   V ++P        G +  +M  +V  +L+AS +V++ F P LG  +L 
Sbjct: 436  AAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVGIALIASWVVAVVFTPYLGVKMLP 495

Query: 695  DAGRREGTVEERRARGLGRLYYAVGGWAIDHRWKVLAGSLLLVVAGFWLQGQLKPQFFPK 754
            D  + +G  +          +  V    I  +W V    + L        G +K QFFP 
Sbjct: 496  DFKKVDGGHDAIYDTPRYNRFRQVLTRVIARKWLVAGSVVALFALAILGMGVVKKQFFPI 555

Query: 755  DRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRAAKGLPPALRSVTVF 814
                   V++ +P   ++  T+  +      ++ +  A                R VT +
Sbjct: 556  SDRPEVLVEVQMPYGTSISQTSAASQKVEAWLSGQKEA----------------RIVTAY 599

Query: 815  TGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALSERL-PSARADVMEL 873
             G G PRF+ ++ PEL  P++A++++          L   L++A+++ L P AR  V +L
Sbjct: 600  VGQGAPRFFLAMGPELPDPSFAKIVIRTDSQEERDALKARLRRAIADGLVPEARVRVTQL 659

Query: 874  ENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWGADTFVARLRVDPD 933
              GP    PV  R+ G D   LR  +  ++ +++A P    V  +WG  +      +  D
Sbjct: 660  VFGPYSPFPVAYRVTGPDPDKLRGIAAEVERVMQASPMMRTVNTDWGTRSPALHFVLQQD 719

Query: 934  KAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDERADATDVEGLYVAGQ 993
            +    G+T   VA+      TGT VTA+RE   TV V++R   D R D   +    +AG 
Sbjct: 720  RLQAVGLTSSAVAQQLQFLLTGTPVTAVREDIRTVQVIARSAGDVRLDPARLGDFTLAGA 779

Query: 994  GGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSEVVARAMPAIGRFRAD 1053
             G R+PL+Q+ + +  ME      R++   + +     + + P +V       +    A 
Sbjct: 780  TGQRIPLSQVGKVDVRMEEPISRWRDRVPTITVRGDIADNLQPPDVSTAITTQLQPIIAK 839

Query: 1054 LPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNAVKPLIVFAAIPYGMT 1113
            LP G+R+E  G  EE  K    +  +  I +A+  + ++FQ R+    ++VF   P G+ 
Sbjct: 840  LPSGYRIEQAGSIEESAKATTAMLPLFPIMLAITLVIIIFQVRSISAMVMVFMTSPLGLI 899

Query: 1114 GAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREEGEDLRTALLDAGIVR 1173
            G    L L GQPFG  A +G+ +L G+++ + ++L   I +    G D   A+++A + R
Sbjct: 900  GVVPTLILFGQPFGINALVGLIALSGILMRNTLILIGQIHQNENAGLDPFNAVVEATVQR 959

Query: 1174 LRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTLLMVPVLYAI 1227
             RPV++T  A ++A  PL       W  L Y   GG    T +TL+ +P ++AI
Sbjct: 960  ARPVILTAMAAILAFIPLT--HSVFWGTLAYTLIGGTFAGTILTLVFLPAMFAI 1011



 Score = 52.4 bits (124), Expect = 2e-10
 Identities = 29/129 (22%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 16  NSARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEE 75
           N +   V +R I   L+    + G+ ++  + + +DP   ++   ++  WPGA A+ + +
Sbjct: 7   NLSALAVRERSITLFLICLISLAGLLSFFKLGRAEDPAFTIKVMTIVSVWPGATAQEMHD 66

Query: 76  RITRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFRLQ---EVGQ 132
           ++  ++E+ +   +W ++ E+ +R GL+  TL L +    ++   +    R +   E   
Sbjct: 67  QVAEKIEKRMQELRWYDRTETYTRPGLAFTTLTLLDSTPPSEVQEEFYQARKKIGDEAAN 126

Query: 133 LPDGA-GPL 140
           LP G  GP+
Sbjct: 127 LPAGVIGPM 135