Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1042 a.a., Multidrug efflux pump subunit AcrB from Paraburkholderia bryophila 376MFSha3.1

 Score =  399 bits (1026), Expect = e-115
 Identities = 284/910 (31%), Positives = 446/910 (49%), Gaps = 47/910 (5%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D    +  +  D +S   L  Y +++R  L R+  V KV  +G   + I+I+ +  +L  
Sbjct: 146  DVYTNIYTLEGDGFSPAQLHDYADQLRTVLLRVPGVAKVDYFGDPDQHIYIEITNTQLTR 205

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            LG+ PQQ+ Q + ++N     G L T    V +   G+ +  T LA+ ++  +  G    
Sbjct: 206  LGISPQQLGQAINSQNAVSQAGTLTTTDDRVFVRPSGQFKDVTALADTLIRIN--GRSFR 263

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAIT-LAVEMRSGEHIDAFSREVDAAL 508
            L D+A + R Y  PV      V +   G    G+A+  + V M+ G  +    + +DA +
Sbjct: 264  LGDIATIKRGYDDPV------VTQMRAG----GQAVLGIGVTMQPGGDVIRLGKALDAEM 313

Query: 509  GDLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMAL 568
              L + LP  L +   S  P  V   VD F  ++ EAV +V+ V+ +     R+ +++ +
Sbjct: 314  VRLRKALPVGLQLTEVSSMPHAVAHSVDDFLEAVAEAVAIVLVVSLVSLGV-RTGMVVVI 372

Query: 569  SIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAA 628
            SIP+ LA+T   M+L  I L ++S+ +L+LALGLLVDD ++A + +  ++ +G  R  AA
Sbjct: 373  SIPVVLAVTALCMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQGWSRTRAA 432

Query: 629  WLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPL 688
                T  A  +L  T+  +  +LP  L     G +  S+  V A +L+AS + ++  IPL
Sbjct: 433  AFAYTSTAFPMLTGTLVTVSGFLPIALAKSSTGEYTRSIFEVSAIALIASWLAAVVLIPL 492

Query: 689  LGSVLLDAGRREGTVEERRARGL--GRLYYAVGGW---AIDHRWKVLAGSLLLVV---AG 740
            LG  LL   +R     +     +   R Y  + GW    I+ R+ VLA +++L V   AG
Sbjct: 493  LGYHLLPERKRAAHEADDHEHDIYDTRFYSRLRGWIGWCIERRFVVLAITVVLFVLAMAG 552

Query: 741  FWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAETGRA 800
            F L  Q   QFFP        VD+ LPE A+  AT R A    +++  R           
Sbjct: 553  FTLVPQ---QFFPSSDRPELLVDVRLPEGASFNATLREAQRLEKVLVGR----------- 598

Query: 801  AKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQQALS 860
                 P +     F G G PRF+  +  +L QPN+AQ ++        ++L   L+  L 
Sbjct: 599  -----PEIDHTVDFVGTGAPRFYLPLDQQLTQPNFAQFVITAKSVKDREKLAQWLEPELR 653

Query: 861  ERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVKDNWG 920
               P+ R  +  LENGPP+G PVQ R+ GDDI  +R+ +ER+ A LR+D     V+ +W 
Sbjct: 654  NNFPAIRTRLSRLENGPPVGYPVQFRVSGDDIATVRSIAERVAATLRSDHGTRNVQFDWD 713

Query: 921  --ADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRLRPDE 978
              A+  V R  VD  KA   GV+  D++       +G TVT  RE    + V  R    E
Sbjct: 714  EPAERSV-RFEVDQKKARELGVSSDDISSFLAMTLSGYTVTQYRERDKLISVDLRAPKAE 772

Query: 979  RADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGVLPSE 1038
            R D   +  L +    G  VPL  +      +E   I+ R++Q  + +      G    +
Sbjct: 773  RVDPAKLLTLAMPTPNGA-VPLGTLGHLRNDLEYGVIWERDRQPTITVQSDVAPGAQGID 831

Query: 1039 VVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQFRNA 1098
            V      A+G  RA+LP G+R++ GG  EE  KG   +   M I I  +   L+ Q ++ 
Sbjct: 832  VTHAVDKALGPIRANLPVGYRIQIGGSVEESGKGQTSINAQMPIMIIAVLTLLMIQLQSF 891

Query: 1099 VKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEEKREE 1158
             + L+V    P G+ G    L L GQPFGF+A LG+ ++ G+I+ + ++L D IE+    
Sbjct: 892  ARVLMVVLTAPLGLIGVVFTLLLFGQPFGFVAMLGVIAMFGIIMRNSVILVDQIEQDIAS 951

Query: 1159 GEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVATFVTL 1218
            G     A++ A + R RP+ +T AA V+AL PL       + P+  A  GG+T AT +TL
Sbjct: 952  GHKRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSN--FFGPMATALMGGITSATVLTL 1009

Query: 1219 LMVPVLYAIA 1228
              +P LYA++
Sbjct: 1010 FYLPALYAMS 1019



 Score = 50.1 bits (118), Expect = 1e-09
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 31  LLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEERITRRVEEAVGGNKW 90
           L+     +G+ A+  + Q +DP    R   +   WPGA A +V+E++T R+   +     
Sbjct: 26  LIALATAFGILAYTRLAQSEDPPFTFRVMVIRTFWPGATARQVQEQVTDRIGRKLQETPA 85

Query: 91  VEKIESVSRTGLSVVTLHLHERVAQTDTVLDDIGFRLQE-----VGQLPDGAGPLTYIKD 145
           ++ + S SR G S++   + +     D  + +  +++++        LP G     +  +
Sbjct: 86  IDFVRSYSRPGESLMFFTMKDSAPVKD--VPETWYQVRKKVGDIAATLPQGIQGPFFNDE 143

Query: 146 FGDTSTLMLTVASPRVSGVEL 166
           FGD  T + T+     S  +L
Sbjct: 144 FGDVYTNIYTLEGDGFSPAQL 164