Pairwise Alignments

Query, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1063 a.a., Multidrug efflux pump subunit AcrB from Paraburkholderia bryophila 376MFSha3.1

 Score =  402 bits (1033), Expect = e-116
 Identities = 274/912 (30%), Positives = 436/912 (47%), Gaps = 49/912 (5%)

Query: 330  DARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGVRPETIFIDWSQERLAS 389
            D    + A+  D ++   L  Y +K+R  L R+  V KV  +G   + IF++ S  +L  
Sbjct: 164  DVYTNIYALEGDGFTPAQLHDYADKLRTVLLRVPGVAKVDYFGDPDQHIFVEVSNAQLTR 223

Query: 390  LGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATDLAEVMVATSASGAPLY 449
            L + PQQ+AQ + A+NT  P G + T    V +   G ++    LA+V++  +       
Sbjct: 224  LSITPQQLAQAIDAQNTVAPVGTVTTADDRVFVRPSGAIKDEQALADVLITINKR--TFR 281

Query: 450  LRDVADVTRSYRAPVENLNHFVHRDADGTWRRGKAIT-LAVEMRSGEHIDAFSREVDAAL 508
            L D+A + R Y  P                  G+A+  + V M+ G  +    + +DA  
Sbjct: 282  LGDIATIRRGYDDPPVTQMRV----------GGQAVLGIGVTMQKGGDVIDLGKALDAKA 331

Query: 509  GDLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAVAFIGFREWRSALLMAL 568
             +L   LP  L +   S  P  V   VD F  S+ EAV +V+ V+ +     R+ +++ +
Sbjct: 332  SELQATLPAGLKLAPVSSMPHAVKHSVDEFVRSVGEAVAIVLVVSLVSLG-LRTGMVVVI 390

Query: 569  SIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGDAIKREIAEGRPRRLAA 628
            +IP+ LA+T   MHL GI L ++S+ +L+LALGLLVDD ++A + +  ++ +G  R  AA
Sbjct: 391  TIPIVLAVTALCMHLFGIGLDKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQGWSRTRAA 450

Query: 629  WLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVACSLVASRIVSMTFIPL 688
                T  A  +L  T+  +  +LP  L     G +  S+  V A +LV S   ++  +PL
Sbjct: 451  AFAYTSTAFPMLTGTLVTVCGFLPIALAKSSTGEYTRSIFEVSAIALVVSWFAAVVLVPL 510

Query: 689  LGSVLLDA---------GRREGTVEERRARGLGRLYYAVGGWA---IDHRWKVLAGSLLL 736
            LG  +L           G + G   E      G  Y  + GW    I+ RW VL  + +L
Sbjct: 511  LGFHMLPERKGHAGSGHGHQHGHEHEHDVYNTG-FYKRLAGWVTWCIERRWVVLGVTAVL 569

Query: 737  VVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRVAAFDAE 796
                     ++  QFFP        VDL LPE A+ EAT R A    +++  +       
Sbjct: 570  FAIAMGAFTRVPQQFFPNSERPELLVDLRLPEGASFEATLREAKRLEKVLDGKAE----- 624

Query: 797  TGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKELIGPLQ 856
                       ++    F G G PRF+  +  +L+QPN+AQ ++   D    +EL+  L 
Sbjct: 625  -----------IQHFVDFVGTGAPRFYLPLDQQLQQPNFAQFVITARDVETREELMHWLD 673

Query: 857  QALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADPDATRVK 916
              L +     R  V  LENGPP+G P++ R+ GDDI  +R+ +E +   +R D     V+
Sbjct: 674  TKLEKEFSGVRTRVARLENGPPVGFPIKFRVSGDDIATVRSLAETVAEKVRGDSRTRNVQ 733

Query: 917  DNWG--ADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPVVSRL 974
             +W   A+  ++   +D ++A   GV+  DV+       +G TVT  RE    + V  R 
Sbjct: 734  FDWDEPAERSIS-FEIDQNRARQLGVSSEDVSSFLAMTLSGYTVTQYRERDKLINVDLRA 792

Query: 975  RPDERADATDVEGLYVAGQGGTRVPLAQIAEPEYGMETARIFRRNQQRCVVISCFPREGV 1034
               ER D   +  L +    G  VPL  +      +E   I+ R++Q  + +    R   
Sbjct: 793  PKSERVDPAKLTSLAIPTPNGP-VPLGSLGHVRDTLEYGVIWERDRQPTITVQADVRGDA 851

Query: 1035 LPSEVVARAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISIAMIYMALLFQ 1094
               +V      A+   RA LP G+R++ GG  EE VKG   +   M + I  +   L+ Q
Sbjct: 852  QGIDVTRDIDHALTSVRATLPVGYRIDVGGAVEESVKGQTSINAEMPLMIIAVLTLLMIQ 911

Query: 1095 FRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSHIIVLFDFIEE 1154
             +N  +  IV    P G+ G   AL L G+PFGF+A LG+ ++ G+I+ + ++L D I++
Sbjct: 912  LKNFARTFIVVLTAPLGLIGVVTALLLFGKPFGFVALLGVIAMFGIIMRNSVILVDQIDQ 971

Query: 1155 KREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCYAQAGGLTVAT 1214
                G     A++ A + R RP+M+T AA V+AL PL   G   + P+  A  GG+T+AT
Sbjct: 972  DIAAGHARFDAIIGATVRRFRPIMLTAAAAVLALIPLLRSG--FFGPMATALMGGITIAT 1029

Query: 1215 FVTLLMVPVLYA 1226
             +T+  +P LYA
Sbjct: 1030 VLTVFFLPALYA 1041



 Score = 49.3 bits (116), Expect = 2e-09
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 4/131 (3%)

Query: 24  QRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEERITRRVEE 83
           Q+ + +++ +ATL +GV  +  + Q +DP    R   +   WPGA A  V+E+IT R+  
Sbjct: 38  QQLVIFLIGLATL-FGVIGYTRLAQSEDPPFTFRTMVIQTYWPGATARDVQEQITDRIGR 96

Query: 84  AVGGNKWVEKIESVSRTGLSVVTLHLHER--VAQTDTVLDDIGFRLQEV-GQLPDGAGPL 140
            +    +V+ I+S SR G S++   + +   V +       +  ++ ++   LP G    
Sbjct: 97  QLQAAPYVDNIKSYSRPGESMIFFAMKDSAPVKEVPETWYQVRKKVGDIRATLPKGTVGP 156

Query: 141 TYIKDFGDTST 151
            +  +FGD  T
Sbjct: 157 FFNDEFGDVYT 167