Pairwise Alignments

Query, 246 a.a., chemotaxis protein MotB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 283 a.a., flagellar motor protein from Dechlorosoma suillum PS

 Score =  105 bits (263), Expect = 7e-28
 Identities = 77/252 (30%), Positives = 126/252 (50%), Gaps = 30/252 (11%)

Query: 6   RKTRRKPHQHIPQQGWMLTYSDLVTLLLAFFVLLVSMSSVDRVQFERMASSL----RQPG 61
           R+ ++   +H   + W+++Y+D +TLL AFFV++ ++SSV+  ++  ++ SL    + P 
Sbjct: 3   RRNKKHADEHENLERWLVSYADFITLLFAFFVVMYAISSVNEGKYRVLSDSLITAFKNPS 62

Query: 62  DLAGTPEAPRTDVSKRLRDLLMD----------AEALSANAVEIRSL---LFPPQVLPPG 108
            + G      T V KR  D ++            EA      ++R++   +F   VL P 
Sbjct: 63  IVDG---GAITVVPKRTPDSVVKQIVVKEDPKVVEAKQQQRDKMRNVAKDIFA--VLAPL 117

Query: 109 VEARTVERDVEVLENPEGVVIALTHDLLFPQGQDRLPPASLRLLDTLTDVLAGLDADVNV 168
           V+    +  V VLE   GV I +   +LF  GQ +L   S+R +  + +VLA  D  + +
Sbjct: 118 VQ----QGKVRVLETARGVTIEINDSILFAPGQAQLEQTSIRAMRAVGEVLAPTDFPITI 173

Query: 169 SAHTD----ATEGGADPWDLSDRRALSVLEHFLQRGMDPARFSVSGYGPDRPLDASASPE 224
             HTD     T      W+LS  RA +VL  F+  G+ P   +  GYG  RP++ + + E
Sbjct: 174 EGHTDNIPIRTAQFPSNWELSAVRATTVLRLFVDAGVAPTHLTAIGYGETRPVEMNETVE 233

Query: 225 AAQRNRRVEILV 236
              RNRRV IL+
Sbjct: 234 GRARNRRVSILI 245