Pairwise Alignments

Query, 246 a.a., chemotaxis protein MotB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 311 a.a., OmpA/MotB domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  197 bits (501), Expect = 2e-55
 Identities = 122/280 (43%), Positives = 163/280 (58%), Gaps = 40/280 (14%)

Query: 6   RKTRRKPHQHIPQQGWMLTYSDLVTLLLAFFVLLVSMSSVDRVQFERMASSLRQPGDLAG 65
           R+ RR   +  P+Q W+LTYSDLVTLLL FFVLL+SMSS++RV   R+ S   + G+ A 
Sbjct: 32  RRPRRAQEEDKPRQPWLLTYSDLVTLLLTFFVLLLSMSSMNRVTLSRIGSHFGEAGEQAL 91

Query: 66  TPEAPRTDVSKRLRDLLMDAEALSANAVEIRSLLFPPQVLPPGVEARTVERDVEVLENPE 125
                  +  + L  LL     + A+  EI+ LLFP   LPPG++  T+++++ +LE+PE
Sbjct: 92  GVTGSVPERIRLLEPLLARPAQVFAHQREIKELLFPGAELPPGIDRSTLDKNLRILEHPE 151

Query: 126 GVVIALTHDLLFPQGQDRLPPASLRLLDTLTDVLAGLDADVNVSAHTD------------ 173
           GVV+ALT DLLF  GQ +L  AS  LL  L +VL  + ADV ++ H+D            
Sbjct: 152 GVVLALTDDLLFAPGQWQLREASRPLLGMLAEVLEYVTADVAIAGHSDPRTEGVSALEQA 211

Query: 174 --------ATEGGADPWDLSDRRALSVLEHFLQRGMDPARFSVSGYGPDRPL-------- 217
                      G A  ++L+ RRAL+VLE+F+QR +DPARFSV+GYGPDRP         
Sbjct: 212 AGAGGGAGVVTGDAIGYELAGRRALTVLEYFVQRKLDPARFSVAGYGPDRPSLAGQPPSP 271

Query: 218 ------DASASPEAA------QRNRRVEILVKTAKRPGRY 245
                 +AS  P+AA       RNRRVEILVKT  R G Y
Sbjct: 272 GAPGVPEASGEPDAAAGSSDPDRNRRVEILVKTTPRLGGY 311