Pairwise Alignments

Query, 246 a.a., chemotaxis protein MotB (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 307 a.a., OmpA/MotB domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 89.0 bits (219), Expect = 1e-22
 Identities = 78/259 (30%), Positives = 112/259 (43%), Gaps = 51/259 (19%)

Query: 7   KTRRKPHQH-IPQQGWMLTYSDLVTLLLAFFVLLVSMSSVD---RVQF----------ER 52
           + RRKP    I Q  W++TYSDL+TLLL FFVLLV++S +D   RV            E+
Sbjct: 3   RNRRKPQPAGITQPPWLITYSDLMTLLLTFFVLLVAISVIDERRRVMAVGSVAGSFGQEQ 62

Query: 53  MASSLRQPGDLAGTPE-APRTDVSKRLRDLLMDAEALSANAVEIRSLLFPPQVLPPGVEA 111
             ++LR+P D    P   P  D   R RDL             +R +L+           
Sbjct: 63  GTATLREPADGRPVPGIVPMGDAPPRGRDL-----------TPLRDMLW----------- 100

Query: 112 RTVERDVEVLENPEGVVIALTHDLLFPQGQDRLPPASLRLLDTLTDVLAGLDADVNVSAH 171
              ERD+   EN    + ++  ++LF  G   L      LL  +  VL G++  V V+ H
Sbjct: 101 EDAERDINYQENGYIQIFSINDEVLFRTGATELTERGAALLARIAPVLRGVEHPVLVAGH 160

Query: 172 TDAT--EGG------------ADPWDLSDRRALSVLEHFLQRGMDPARFSVSGYGPDRPL 217
                 E G              PW LS  RA +V       G+   R  +  +G  RP 
Sbjct: 161 ASPARDEEGILFRLRGDEKTLPTPWRLSLGRATAVYRRLADLGVPRGRMLIEAHGDTRPR 220

Query: 218 DASASPEAAQRNRRVEILV 236
             + +PE  + NRRV+I++
Sbjct: 221 FDNLTPEGRRANRRVDIVL 239